Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20767
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204 31 1.0
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 30 2.4
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 29 5.4
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 29 5.4
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 28 7.2
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 28 7.2
04_04_0443 - 25253425-25253679,25254072-25254131,25254259-252543... 28 7.2
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 28 9.5
03_06_0054 + 31313348-31313560,31313662-31313856,31313933-313140... 28 9.5
>04_01_0386 + 5100249-5100562,5100877-5100927,5101201-5101204
Length = 122
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/71 (23%), Positives = 31/71 (43%)
Frame = +2
Query: 290 GSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLY 469
GS D R + A++ D + ++ P +TP H + + + R A HL
Sbjct: 38 GSIDVRAGGAGDGSAASEYCHDAVAAAAEVIPLLTPLHAVPAAPAASDQVSGGRTARHLT 97
Query: 470 SIIDGKPKEVL 502
++ G +E+L
Sbjct: 98 EVVAGGGREIL 108
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -1
Query: 666 WHIYFWFMFTLFMHLFFYWNMTFFYFCDCTIY 571
W Y +F F F FF++ FF+F +Y
Sbjct: 82 WEGYAFFFFFFFFFFFFFFFFFFFFFFSGDVY 113
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 227 TNPGFLNLKQNFLACFFASRSEEIAIAVT-CFERSLANSRVWATSSYLATA 78
T G++ LKQ C +EI I + C ER +N+ W + YLA A
Sbjct: 1472 TEIGWVILKQLASICSLEGTPDEIEIHLGGCVERKGSNASKWMSLFYLACA 1522
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 657 YFWFMFTLFMHLFFYWNMTFFYFCD 583
+F+F F F FF++ FF+F D
Sbjct: 63 FFFFFFFFFFFFFFFFFFFFFFFFD 87
>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Frame = -1
Query: 390 TSGYKSSKIFKSSSVNLAAP----FVPFMKSVLASALPICIRQSRISKTFLFC 244
TS ++ I S+S N+ + F+P +KSVL CI + IS T+L C
Sbjct: 1003 TSKWRMQGIKPSASKNIISAWKNVFIPTIKSVLEGDKQFCIYKPNIS-TYLLC 1054
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 258 TFLFCWSLLHNEPR 217
TF+ CW LLHNE +
Sbjct: 301 TFMHCWKLLHNEAK 314
>04_04_0443 -
25253425-25253679,25254072-25254131,25254259-25254365,
25256594-25256667,25256865-25256998,25257233-25257304,
25257453-25257522,25257602-25257675,25258403-25258574,
25258910-25258934,25259358-25259517,25259730-25259788,
25259908-25260079
Length = 477
Score = 28.3 bits (60), Expect = 7.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = -1
Query: 375 SSKIFKSSSVNLAAPFVPFMKSV-LASALPICIRQSRISKTFL--FCWSLLHNEPRLPKF 205
SS F ++ A V M +V L S + + S I ++ CWS LH+EP+ K
Sbjct: 169 SSCAFNIFTITWTATLVAVMMAVSLHSKVNEGLLSSGIMGLYIVFLCWSALHSEPQTGKC 228
Query: 204 KTEL 193
T L
Sbjct: 229 HTRL 232
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +2
Query: 323 GTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHL--QITRAAEHLYSII--DGKP 490
G N D + ++ L +PK++L E+GQ+G + ++ H S++ +G
Sbjct: 553 GLNATWNNRGDSMTVVKYLDMHGSPKNDLGEKGQTGVRMSCRVKNRTHHSGSLVTPEGNI 612
Query: 491 KEVLGTH 511
+E+L H
Sbjct: 613 EEMLKEH 619
>03_06_0054 +
31313348-31313560,31313662-31313856,31313933-31314098,
31314193-31314599
Length = 326
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 260 LLILDCLMQMGSADARTDFINGT 328
LL++ + Q+G++D RTD+ N T
Sbjct: 12 LLVVAAVAQLGASDLRTDYYNST 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,612
Number of Sequences: 37544
Number of extensions: 261773
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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