Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20767
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)        28   7.3  
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      28   9.6  

>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 30/74 (40%), Positives = 42/74 (56%)
 Frame = +2

Query: 260 LLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEEGQSGFHL 439
           +L L  LM   S D RTDF+NGTNGA  +TED    +D+ Y  +TP    +EE       
Sbjct: 120 VLELQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITP----DEESDVPVAK 175

Query: 440 QITRAAEHLYSIID 481
           Q+  A+EH+  ++D
Sbjct: 176 QLRTASEHIVKLLD 189



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = +1

Query: 1   EKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVTAIAISSERE 174
           EKRK KL  Y+    +G+ELN+DQK A+A  D V   L+ A+DL KQ   +    +R+
Sbjct: 36  EKRKLKLDGYKKQMDSGQELNADQKAAIANLDVVEMNLDMAKDLLKQFQQMHSEYQRQ 93


>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 5/27 (18%), Positives = 18/27 (66%)
 Frame = -1

Query: 666 WHIYFWFMFTLFMHLFFYWNMTFFYFC 586
           +H Y+++ +  + + ++Y+   ++Y+C
Sbjct: 7   YHYYYYYYYYYYYYYYYYYYYYYYYYC 33


>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
          Length = 3107

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 22  TSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFA-RDLSKQ 141
           +SY  +QK  +EL  D   A AK++E+   L+ A R+L K+
Sbjct: 497 SSYLAVQKEKEELQDDLLTAQAKFNELQAELDKAHRELQKE 537


>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 245  QNKKVLLI--LDCLMQMGSADARTDFINGTNGAAKLTEDDLKI-LDDLYPEVTPKHELNE 415
            Q  + LLI  +   +Q    DA + FI   N   K+T++D+K+ L+ L P +      N 
Sbjct: 1567 QRPRPLLIGNITAKVQKDKWDANSIFIQNLNQGEKITKNDIKLALECLSPSIA---ITNP 1623

Query: 416  EGQSGFHLQITRAAEHLYSIIDGKPKEV 499
            E Q   H Q  R  E     +D + +E+
Sbjct: 1624 EQQIQIHYQ--RRPETTGEELDSQKEEL 1649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,167
Number of Sequences: 59808
Number of extensions: 321223
Number of successful extensions: 807
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)