Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20767
         (771 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    29   4.5  
At5g28350.2 68418.m03443 expressed protein                             28   5.9  
At5g28350.1 68418.m03442 expressed protein                             28   5.9  
At3g61480.1 68416.m06885 expressed protein                             28   5.9  
At3g20150.1 68416.m02554 kinesin motor family protein contains P...    28   5.9  
At1g71760.1 68414.m08294 hypothetical protein                          28   7.9  

>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +1

Query: 16  KLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVT 147
           KL     L    +++N DQK A  +Y E+   L+F + L+K+VT
Sbjct: 766 KLLKMGSLYGFWRQVNEDQKKAKKRYIEMLYNLQF-KQLTKKVT 808


>At5g28350.2 68418.m03443 expressed protein
          Length = 1087

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 387  SGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTFLF 247
            S +K S + KSSS    +P V  +KS+L S     +    +SK   F
Sbjct: 913  SSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAF 959


>At5g28350.1 68418.m03442 expressed protein
          Length = 1127

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 387  SGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTFLF 247
            S +K S + KSSS    +P V  +KS+L S     +    +SK   F
Sbjct: 953  SSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAF 999


>At3g61480.1 68416.m06885 expressed protein
          Length = 1091

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -1

Query: 387  SGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTFLF 247
            S +K S + KSSS    +P V  +KS+L S     +    +SK   F
Sbjct: 918  SSHKKSSLDKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAF 964


>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
            domain, PF00225: Kinesin motor domain
          Length = 1114

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +1

Query: 28   YRDL---QKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVTAIAISSERE 174
            Y DL    KA  E  ++ K AVAK  +      FA+ L+ +++A+ +  ERE
Sbjct: 960  YNDLCSKHKATVEWITELKKAVAKAGKKGCGSRFAKSLASELSALRVERERE 1011


>At1g71760.1 68414.m08294 hypothetical protein
          Length = 259

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 314 FINGTNGAAKLTEDDLKILDDLYPEVTPKHELNEE 418
           F+   N + K+ +++   + D +PEV  + E+NEE
Sbjct: 56  FVQSFNMSRKVADEEAHAVGDSFPEVYVEGEVNEE 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,721
Number of Sequences: 28952
Number of extensions: 229179
Number of successful extensions: 608
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)