Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20766
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 116 3e-26
08_02_0586 - 19024584-19024655,19024745-19024855,19024967-190250... 77 1e-14
01_06_1836 + 40228508-40230448 29 2.9
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 29 5.1
11_03_0071 - 9589669-9590079,9592113-9592334,9592455-9592608,959... 28 8.8
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 28 8.8
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 28 8.8
03_02_0091 + 5574528-5577254 28 8.8
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 116 bits (278), Expect = 3e-26
Identities = 48/70 (68%), Positives = 56/70 (80%)
Frame = +1
Query: 523 WWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQG 702
WWRPNFE YPY PPHITKPKE K+LF+V L +R FAVP+N KL+A PLFELYDN Q
Sbjct: 121 WWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQR 180
Query: 703 YGPIISSLSQ 732
YGP+IS++ Q
Sbjct: 181 YGPVISTIPQ 190
Score = 90.6 bits (215), Expect = 1e-18
Identities = 43/71 (60%), Positives = 50/71 (70%)
Frame = +2
Query: 257 SVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEI 436
SV RF RM+ + K GMR SVE +LLV EH PH+LLLQ+G F KLPGG L PGE+EI
Sbjct: 31 SVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEI 90
Query: 437 DGLKRLLTETL 469
+GLKR L L
Sbjct: 91 EGLKRKLCSKL 101
Score = 41.9 bits (94), Expect = 5e-04
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +3
Query: 192 INLYPLTNYTFGTKEPLFEKD 254
+N+YPL NYTFGTKEP EKD
Sbjct: 9 VNVYPLANYTFGTKEPKMEKD 29
>08_02_0586 -
19024584-19024655,19024745-19024855,19024967-19025053,
19025154-19025245,19025456-19025595,19025689-19025867
Length = 226
Score = 77.0 bits (181), Expect = 1e-14
Identities = 33/71 (46%), Positives = 47/71 (66%)
Frame = +1
Query: 514 IGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDN 693
IG WWR F+ +PY+ P+ PKE +LFL++L F VP+N KL+A PL +++DN
Sbjct: 142 IGMWWRSEFDAAPFPYLLPNARAPKECIKLFLIKLPVSRQFVVPRNMKLLAVPLSQIHDN 201
Query: 694 AQGYGPIISSL 726
AQ YG II+ +
Sbjct: 202 AQVYGSIIAGI 212
Score = 68.5 bits (160), Expect = 5e-12
Identities = 37/74 (50%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Frame = +2
Query: 269 RFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLK 448
R R++ F G+R SV GVLLV PHVLLLQ+ + F LPGG L PGE ++ GLK
Sbjct: 53 RALRLKANFAAHGLRTSVHGVLLVELFDHPHVLLLQVRNSSFLLPGGRLRPGEQDVQGLK 112
Query: 449 RLLTETL---GRQD 481
R L+ L G QD
Sbjct: 113 RKLSTKLSVAGHQD 126
>01_06_1836 + 40228508-40230448
Length = 646
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 398 LPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIETQ*ETGGDRIS 541
LPGGE++P + RLL + + + ++W +T+ E GGD ++
Sbjct: 408 LPGGEIHPLTRYVMNYVRLLADYSRSLNQLLKDW--DTELENGGDNVN 453
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 245 RERPSVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV 364
R RP+ + M + K+G S GV+L H+HG+P V
Sbjct: 82 RRRPNY-GEVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLV 120
>11_03_0071 -
9589669-9590079,9592113-9592334,9592455-9592608,
9592981-9593212,9593303-9593558,9593850-9593870
Length = 431
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 132 PGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLFE 248
PGL + +N S+NL + N+ L Y + TK + E
Sbjct: 24 PGLNDTVFKNESLNLMSVQHQNIVKLIGYCYETKNKVVE 62
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.9 bits (59), Expect = 8.8
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Frame = +2
Query: 311 RRSVEGVLLVHEH-------GLPHVLLLQLGTAFFK----LPG--GELNPGEDEIDGLKR 451
RR++ G+L EH G H LL +LGT + L G GEL +DE++ +
Sbjct: 504 RRAMNGLLTEMEHAVVSAAEGAIHTLLGKLGTIVLQEAQLLGGIRGELQHLKDELESMTA 563
Query: 452 LLTETLGRQDGVKQ 493
L + GR + KQ
Sbjct: 564 FLQDLSGRDECGKQ 577
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 304 RNEKVSRRCVIST*TWSPSCAVTATRHCVFQVARWRIESWRG 429
R +VSR+ T S T T C F RWR++ G
Sbjct: 49 RGRRVSRQLYAVPVTPSSMAPATRTARCTFSWRRWRLDGGGG 90
>03_02_0091 + 5574528-5577254
Length = 908
Score = 27.9 bits (59), Expect = 8.8
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 233 GAAVRERPSVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP----HVLLLQLGTAFFKL 400
G ++R R + F+R R+ MR SVE + + P VL+LQ A +
Sbjct: 511 GVSLRSRQKLVEFFERARDAERVSAMRSSVERLRAMPPPSSPCRSLSVLMLQHNAALRDI 570
Query: 401 PGGEL 415
PGG L
Sbjct: 571 PGGFL 575
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,449,719
Number of Sequences: 37544
Number of extensions: 436901
Number of successful extensions: 1186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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