Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20766
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.2  
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   5.2  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_18904| Best HMM Match : Phage_integrase (HMM E-Value=0.36)          29   5.2  
SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)                   28   9.0  
SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)                       28   9.0  

>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 535 NFEPPQYPYIPPHITKPKEHKRLFLVQLQ 621
           NF PPQ  YIPP    PK  + LF+  L+
Sbjct: 218 NFTPPQQEYIPPE-EDPKATRTLFVGNLE 245


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
 Frame = -3

Query: 290  PLASSGTSPGPTVFLEQRLLSSERVIRKRIQINRPIES-----*IHAWVLAYLM--L*SW 132
            P+AS   +P P       + S+E++++KR +   P  +      +  WV   L+  L   
Sbjct: 1570 PIASPSNTPDPPPIDNVEVFSAEKLLKKRAKNETPTRTVNAIMSMGTWVTLLLLFNLVHT 1629

Query: 131  SRRPLFVTGRPL 96
            + RPL  +G+PL
Sbjct: 1630 NERPLDNSGKPL 1641


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +2

Query: 557  HTFRLTSRNQRSISAYSWFNCKTELCSLYRRITSWLRHHCLNCTI 691
            H F   S +     A+ W   +      Y +  + LRHH   C +
Sbjct: 2241 HAFHFNSSSGARSQAFDWMEDRAPRIFTYNKFVTKLRHHLALCNV 2285


>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 102 PPGNKQWPARPGLQHQISQNPSMNLTLNRSIN-LYPLTN 215
           PPG    PAR  L+H  ++N  + L  NR    L P  N
Sbjct: 327 PPGMTPRPARSNLEHDYNKNTDLLLQANRGCEFLAPCEN 365


>SB_18904| Best HMM Match : Phage_integrase (HMM E-Value=0.36)
          Length = 182

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +2

Query: 557 HTFRLTSRNQRSISAYSWFNCKTELCSLYRRITSWLRHHCLNCTI 691
           H F   S +     A+ W   +      Y +  + LRHH   C +
Sbjct: 71  HAFHFNSSSGARSQAFDWMENRAPRIFTYNKFVTKLRHHLALCNV 115


>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
          Length = 451

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 537 IRSPPVSYCVSMSHSCLTPSCLPKVSVRS 451
           +++  V  C+S++ SC  P C  ++S RS
Sbjct: 202 VQTKTVGTCISVTSSCANPKCRKEMSWRS 230


>SB_17656| Best HMM Match : TIR (HMM E-Value=1.3)
          Length = 719

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = +3

Query: 75  KYKMAAVQGPPGNKQ---WPARPGLQHQISQNPSMNLTLNRSINLYPLTNYTFGTKEPLF 245
           K K+ +   PP +K    W   P  + Q+  N + NL   + IN Y +T  TF   +PLF
Sbjct: 386 KSKLHSFPPPPRDKSKEVWVPLPSPE-QLRTNDTENLRFMQ-IN-YTITRMTFDPPKPLF 442

Query: 246 EK 251
           +K
Sbjct: 443 DK 444


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,941,820
Number of Sequences: 59808
Number of extensions: 504696
Number of successful extensions: 1373
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)