Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20766
         (736 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    24   5.6  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    24   5.6  

>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 486 SNRNGSLKHNRKLVATEFRTTAISIHSASHHETKGA*APIPGST--ARQSSVRCTEELQA 659
           SNR       R+  A   R+T  S   A     + +  P+P S+  +R SS+RC     A
Sbjct: 30  SNRTVRCPRTRRSEAVMTRSTPSSPRLA-----QASTCPVPCSSIWSRPSSMRCAPARTA 84

Query: 660 GCGT 671
            C T
Sbjct: 85  SCST 88


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 700 PEHYRTIQTMVPQPACNSSVQRTELCLAVEPGIGAYAPLVS 578
           P+H+   ++  PQ    S  Q TE+  A++P      P +S
Sbjct: 372 PDHFLDHRSPSPQRGNQSLSQMTEILEAIQPEFPPTPPQLS 412


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,858
Number of Sequences: 2352
Number of extensions: 17158
Number of successful extensions: 28
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)