Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20766
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical pr...   131   4e-31
U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protei...    31   1.1  
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical pr...    28   7.9  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>Z79755-4|CAB02106.1|  227|Caenorhabditis elegans Hypothetical
           protein F43G9.5 protein.
          Length = 227

 Score =  131 bits (317), Expect = 4e-31
 Identities = 54/71 (76%), Positives = 62/71 (87%)
 Frame = +1

Query: 514 IGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDN 693
           IGNWWRPNF+PP+YPYIP H+TKPKEH +L LVQL  ++ F VPKN+KLVAAPLFELYDN
Sbjct: 142 IGNWWRPNFDPPRYPYIPAHVTKPKEHTKLLLVQLPSKSTFCVPKNFKLVAAPLFELYDN 201

Query: 694 AQGYGPIISSL 726
           A  YGP+ISSL
Sbjct: 202 AAAYGPLISSL 212



 Score =  129 bits (311), Expect = 2e-30
 Identities = 59/93 (63%), Positives = 71/93 (76%)
 Frame = +2

Query: 236 AAVRERPSVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGEL 415
           A   +  SVP RF+RM++E+  +GMRRSVE VL+VHEH LPH+LLLQ+GT F+KLPGGEL
Sbjct: 49  AQAEKDKSVPERFKRMKDEYEVMGMRRSVEAVLIVHEHSLPHILLLQIGTTFYKLPGGEL 108

Query: 416 NPGEDEIDGLKRLLTETLGRQDGVKQEWLIETQ 514
             GEDEI G+ RLL ETLGR DG   EW IE +
Sbjct: 109 ELGEDEISGVTRLLNETLGRTDGETNEWTIEDE 141



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = +3

Query: 183 NRSINLYPLTNYTFGTKEPLFEKD 254
           NR+IN+YPLTNYTFGTK+   EKD
Sbjct: 31  NRTINVYPLTNYTFGTKDAQAEKD 54


>U21318-2|AAC46668.1|  285|Caenorhabditis elegans Collagen protein
           75 protein.
          Length = 285

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 12  LGKTIFSCDHLCIRGFVENKIKYKMAAVQGPPGNKQWPARPGLQHQISQNPSMNL 176
           L + +F C  +C  G  + K  YK   + GPPG   WP  PG++    +  S  L
Sbjct: 120 LYQQVFGC-RICPYG-PKGKSGYK--GIDGPPGIPGWPGEPGVRGMNGERGSTGL 170


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 512 Q*ETGGDRISNHRNIHTFRLTSRNQRSISAYSWFNCKTELCSLYRRITSWLRHHCLNCTI 691
           Q   GG R+ N      F    +N  +I     F+ +  LC++ R  TS LR H  NC  
Sbjct: 77  QTRNGGKRVENVFE-EVFDKLVKNLPNIR--DMFSTRMFLCAMSRGTTSTLRDHSKNCVK 133

Query: 692 ML 697
           M+
Sbjct: 134 MI 135


>Z81057-4|CAB02918.1|  559|Caenorhabditis elegans Hypothetical
           protein F10D11.5 protein.
          Length = 559

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/28 (50%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +3

Query: 138 LQHQISQNP--SMNLTLNRSINLYPLTN 215
           L+H+I   P  S+NLT+NR  N+  LTN
Sbjct: 165 LEHEIQSKPARSVNLTVNRVWNIKCLTN 192


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 81  KMAAVQGPPGNKQWPARPGLQ 143
           ++A ++GPPG    P  PGLQ
Sbjct: 253 EVAGLEGPPGQSGLPGMPGLQ 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,542,426
Number of Sequences: 27780
Number of extensions: 381965
Number of successful extensions: 1254
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)