Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20765
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    42   5e-06
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    42   5e-06
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = +1

Query: 19  LFGGIAGAASVFGNTPIDVVKTRMQGLEAAK-------YKNTVDCFVKTWKHEGPLAFYK 177
           L GG+A A S     PI+ VK  +Q    +K       YK  +DCFV+  K +G L++++
Sbjct: 15  LAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 178 GTVPRLSRVVFDVAITFTIYDSIMDV 255
           G +  + R     A+ F   D    V
Sbjct: 75  GNLANVIRYFPTQALNFAFKDKYKQV 100



 Score = 34.7 bits (76), Expect = 0.001
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 64  PIDVVKTRMQGLEA-AK----YKNTVDCFVKTWKHEGPLAFYKGTVPRLSRVVFDVAITF 228
           P D V+ RM      AK    YK+T+ C+   +K EG  AF+KG    + R     A+  
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGT-GGALVL 290

Query: 229 TIYDSIMDV 255
            +YD I ++
Sbjct: 291 VLYDEIKNL 299



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +1

Query: 4   KYIVGLF--GGIAGAASVFGNTPIDVVKTRM-----QGLEAAKYKNTVDCFVKTWKHEGP 162
           +Y VG    GG AGA S+    P+D  +TR+     +     ++    +C  K +K +G 
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI 172

Query: 163 LAFYKGTVPRLSRVVFDVAITFTIYDS 243
              Y+G    +  ++   A  F  YD+
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDT 199


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 42.3 bits (95), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
 Frame = +1

Query: 19  LFGGIAGAASVFGNTPIDVVKTRMQGLEAAK-------YKNTVDCFVKTWKHEGPLAFYK 177
           L GG+A A S     PI+ VK  +Q    +K       YK  +DCFV+  K +G L++++
Sbjct: 15  LAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 178 GTVPRLSRVVFDVAITFTIYDSIMDV 255
           G +  + R     A+ F   D    V
Sbjct: 75  GNLANVIRYFPTQALNFAFKDKYKQV 100



 Score = 34.7 bits (76), Expect = 0.001
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = +1

Query: 64  PIDVVKTRMQGLEA-AK----YKNTVDCFVKTWKHEGPLAFYKGTVPRLSRVVFDVAITF 228
           P D V+ RM      AK    YK+T+ C+   +K EG  AF+KG    + R     A+  
Sbjct: 232 PFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGT-GGALVL 290

Query: 229 TIYDSIMDV 255
            +YD I ++
Sbjct: 291 VLYDEIKNL 299



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
 Frame = +1

Query: 4   KYIVGLF--GGIAGAASVFGNTPIDVVKTRM-----QGLEAAKYKNTVDCFVKTWKHEGP 162
           +Y VG    GG AGA S+    P+D  +TR+     +     ++    +C  K +K +G 
Sbjct: 113 RYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGI 172

Query: 163 LAFYKGTVPRLSRVVFDVAITFTIYDS 243
              Y+G    +  ++   A  F  YD+
Sbjct: 173 TGLYRGFGVSVQGIIIYRAAYFGFYDT 199


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 140 FTKQSTVFLYLAASRPCMRVLTTSMGVLPNTEAAPAIPPNS 18
           F    TVF+++A    C+  +       P   A P  PP+S
Sbjct: 310 FMSVCTVFVFMALMEYCLVNIVLGDSDTPPKPAPPPPPPSS 350


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 529 VPISTAAGR*RYNNCILIGKKKS 597
           +P+S  +GR RY     +GKK++
Sbjct: 58  IPVSCISGRDRYECIEKVGKKEA 80


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 529 VPISTAAGR*RYNNCILIGKKKS 597
           +P+S  +GR RY     +GKK++
Sbjct: 58  IPVSCISGRDRYECIEKVGKKEA 80


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 529 VPISTAAGR*RYNNCILIGKKKS 597
           +P+S  +GR RY     +GKK++
Sbjct: 58  IPVSCISGRDRYECIEKVGKKEA 80


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 213 VEHDPAEARHGALVERERTLVLPGLHEAV-HGVLVLGRLQALHARFD 76
           + H   ++R   L      +  P   EAV  G LVLG L  +H R D
Sbjct: 84  IRHGRRQSRSMDLNAHREQMSWPVKKEAVVEGDLVLGGLMMVHERQD 130



 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 559 RYNNCILIGKKKSYSKICKSNKTI 630
           RY N  +    K+Y+K C + K +
Sbjct: 437 RYPNASVTPYNKNYTKFCSTEKRL 460


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 40  AASVFGNTPI-DVVKTRMQGLEAAKYKNTVDC 132
           +A+   N+ + D  +T   G+E A+Y   ++C
Sbjct: 546 SANTISNSSLQDYDETEFNGMELARYMGELNC 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,138
Number of Sequences: 438
Number of extensions: 4030
Number of successful extensions: 21
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)