Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20764
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    43   5e-05
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    34   0.024
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.097
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.6  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   2.8  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   3.6  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    27   3.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   4.8  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   4.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   6.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.4  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    25   8.4  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -2

Query: 249 PLTPR*PFRPKDPGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGGPMNP 70
           P  P+ P  P  P +P+ P RP+ P  P +P  P      + V P  PS+P RP  P+ P
Sbjct: 602 PSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP--PAAPVVPEVPSVPQRPAVPVVP 659



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 246 LTPR*PFRPKDPGIPATPSRPSNPGNPTSPGCPGKIS-DGSRVSPLSPSIPCRPGGPMNP 70
           +TP  P  P  P +P  PS    P  P +P  P       + V P +PS+P RP  P+ P
Sbjct: 510 ITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVP 569



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -2

Query: 240 PR*PFRPKDPGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGGPMNP 70
           P+ P  P  P +P+ P  P  P  P +P  P      + V+P  PS+P RP  P+ P
Sbjct: 575 PQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQP--PVAPVAPEVPSVPQRPAVPVVP 629


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -2

Query: 213 PGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGGPMN 73
           PG PA P+ P  PG    PG PG  +     +  +P     P G  N
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMPNGYSN 586



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +2

Query: 146 PGQPGDVGLPGFDGRDGVAGIPGSF 220
           PG P    +PG  G     G PGS+
Sbjct: 540 PGYPAVPAMPGIPGATAPPGAPGSY 564



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 231 PFRPKDPGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIP 97
           PF P  P +PA P  P     P +PG        +  +P   S+P
Sbjct: 538 PF-PGYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.097
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -2

Query: 204  PATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGGPMNPA 67
            P+ P R  + G+ +S      I D +   PL  S P  PG P N A
Sbjct: 1398 PSAPERRDSFGSVSSGSNVSSIEDETSTMPLKASQPTNPGAPSNHA 1443


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/49 (40%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -2

Query: 213 PGIPATPSRPSNPGNPTSPGCPGKISD--GSRVSPLSPSIPCRPGGPMN 73
           P  PATPS+P  P    S    G  S    S  SP SPS P    G  N
Sbjct: 273 PPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSSPSDAYGDPN 321


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 5/28 (17%)
 Frame = +3

Query: 582 YLFCNLNNVC-----DFAQREDYSFWLS 650
           +L C+L   C     DF+ R D+SFW+S
Sbjct: 516 FLLCSLVEQCFGVFNDFSHRFDFSFWIS 543


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 314 SKVNEGLKVSLDCMAASVVPVHQHLH 391
           SKVN+GL    D    S  PV QH H
Sbjct: 287 SKVNQGLIKMYDVEVLSKYPVVQHFH 312


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -2

Query: 618 QSRKHYLDCKTNTALWRIYGDNYLERRDLDREL 520
           +S  +Y  CK++  +W  + D+++    +DR L
Sbjct: 385 RSGHYYSFCKSSNGVWLKFDDDFVSNSSIDRVL 417


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 624 REDYSFWLSTPEPMPMAMTPIQAR 695
           + D SF LSTP P P  +  +Q+R
Sbjct: 323 KPDQSFNLSTPSPAPSNLITLQSR 346


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 151 TTW*CWIARI*WTGWC 198
           T W C  A I W GWC
Sbjct: 502 TEWGCMQALIDWNGWC 517


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 478 LWEGFSLIHITLMEKLTVKISALQVVVSV 564
           LW GFS  ++   +KL + ++ L  +VS+
Sbjct: 53  LWFGFSSKNVKFEQKLDLAVTCLDTIVSL 81


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 231 PFRPKDPGIPATPSRPSN-PGNPTSPGCPGKISDGSRVSPLSPSIPCRPGGPMNP 70
           PFRP    + +TPS  S+ P  P+S   P   S     S +S  IP   G   +P
Sbjct: 102 PFRPPTR-LTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHP 155


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -2

Query: 195 PSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGGPMNP 70
           PS  +     T P   G  S   R  P+ PS+P R   P  P
Sbjct: 4   PSATAFSSATTQPTTEGNASMRKRTIPVVPSVPERKWDPKAP 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,077,901
Number of Sequences: 5004
Number of extensions: 64846
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)