Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20764
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.42 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.9  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   5.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 236 GNHFDQKTLGFLLHHPVHQILAIQHHQVVQVKYLMEA 126
           GNH    T+G   HH  HQ  ++QH    Q   L E+
Sbjct: 339 GNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSES 375


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 74  FIGPPGLQGIEGDKGDTLLPSDI-LPGQPGDVGLPGFDGR 190
           F+  P L G+EG  G  L  SDI L     DV L G   R
Sbjct: 391 FVSSPFLNGLEGLTGRGLFISDIPLHDATRDVILVGEQAR 430


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 311 VSKVNE-GLKVSLDCMAASVVPVHQHLHLQYPNLEDFISRFI 433
           VS  +E GLK+ LD +       H+   L   N+E + + +I
Sbjct: 106 VSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 311 VSKVNE-GLKVSLDCMAASVVPVHQHLHLQYPNLEDFISRFI 433
           VS  +E GLK+ LD +       H+   L   N+E + + +I
Sbjct: 106 VSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 371 GTPISTGRPATVEDTSASLPLS 392


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 371 GTPISTGRPATVEDTSASLPLS 392


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 371 GTPISTGRPATVEDTSASLPLS 392


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 371 GTPISTGRPATVEDTSASLPLS 392


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 371 GTPISTGRPATVEDTSASLPLS 392


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 371 GTPISTGRPATVEDTSASLPLS 392


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 439 GTPISTGRPATVEDTSASLPLS 460


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 174 GNPTSPGCPGKISDGSRVSPLS 109
           G P S G P  + D S   PLS
Sbjct: 439 GTPISTGRPATVEDTSASLPLS 460


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = -2

Query: 219 KDPGIPATPSRPSNPGNPTSPGCPGKISDGSRVSPLSPSIPCRPGGP 79
           K P I     +PS+      P          R SP +PS    PGGP
Sbjct: 5   KQPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 186 PSNPGNPTSPGCPGKISDGSRV 121
           PS  G PT    PG  SDG R+
Sbjct: 368 PSCGGGPTILTTPGLDSDGIRL 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,936
Number of Sequences: 438
Number of extensions: 4494
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)