Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20763
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    55   8e-10
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    24   1.2  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    24   1.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.1  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   2.8  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   8.6  
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    21   8.6  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 54.8 bits (126), Expect = 8e-10
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +3

Query: 3   KASGQRNPLALQLMAQGLYNHSTVTESDDEEEI 101
           KASG +NPLALQLMAQGLYNHST+  + +EEE+
Sbjct: 285 KASGTKNPLALQLMAQGLYNHSTIPLTKEEEEL 317


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 582 LDYCHYLNTNKYIYIIRNIFV 520
           L YCHYLN  +  Y + N ++
Sbjct: 196 LQYCHYLNILRVRYQLLNEYL 216


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 582 LDYCHYLNTNKYIYIIRNIFV 520
           L YCHYLN  +  Y + N ++
Sbjct: 196 LQYCHYLNILRVRYQLLNEYL 216


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 328 TSMTYPPKICHRKTCSIPLHYGP 260
           T   +   I H    S+PLHY P
Sbjct: 142 TDPAFAASIFHAAATSLPLHYPP 164


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 325 RFCLNYVSLFSGLATSKCCHMKIQNFSVN 411
           +F LNY+ +  G+  S C  ++ + F V+
Sbjct: 364 KFLLNYIFIAVGIVGSACTDVEQKFFQVS 392


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 325 RFCLNYVSLFS 357
           RFCLN +S+F+
Sbjct: 318 RFCLNILSIFT 328


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +1

Query: 325 RFCLNYVSLFS 357
           RFCLN +S+F+
Sbjct: 43  RFCLNILSIFT 53


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,345
Number of Sequences: 336
Number of extensions: 3905
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)