Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20763
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    26   5.4  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   9.4  

>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 151 RFS*NFKFGTFSSLLCLLSRISNEGI 228
           +F  + + G F S+L +L +I++EG+
Sbjct: 383 QFKESLRIGNFKSILLILKKINDEGV 408


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 15  QRNPLALQLMAQGLYNHSTVTESDDEEE 98
           QRN L  +L A+G+Y  +   E ++EE+
Sbjct: 425 QRNQLEEELKAKGIYKPTIQGEKEEEED 452


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 349 NLRNSGKTSMTYPPKICHRKTCSIPLHYGPRVT 251
           NLR+SG++    PP   H   C   + YG ++T
Sbjct: 144 NLRDSGES---LPPLFFHDDECISTIEYGKQIT 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,997,563
Number of Sequences: 5004
Number of extensions: 61848
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)