Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20763
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    34   0.11 
03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085     28   7.4  

>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 501 LLFFFKLISKTQCGYVT*VIIILNIAVLSEIYRKILYFHM 382
           +LFF KL+   +CG     ++   I + ++ Y+K+LYF +
Sbjct: 608 ILFFHKLMDTVECGNTEDTVLAKAITIATQSYQKMLYFQI 647


>03_05_0864 - 28362146-28362500,28362585-28362629,28362727-28363085
          Length = 252

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 189 SIVFTFSNFKRRNTLGRVT*PVTRGP*CKGIEHVFRWQIFGGYVIEVLP 335
           + V TF + KR   L   + P TRG  C+G+E+V R    GG    V+P
Sbjct: 166 AFVDTFGDGKRPLALVMGSRPYTRGM-CEGVEYVLRSMRAGGKRRVVVP 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,715,445
Number of Sequences: 37544
Number of extensions: 335780
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)