Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20763
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75553-5|CAA99950.2|  533|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z75953-4|CAJ85747.1|  294|Caenorhabditis elegans Hypothetical pr...    28   8.9  
Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF166171-1|AAD49860.1|  611|Caenorhabditis elegans adducin-head-...    28   8.9  
AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AL023844-8|CAA19534.1|  396|Caenorhabditis elegans Hypothetical
           protein Y48A6B.13 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 245 SNAS*RIPSFEIRESKHNRDEKVPNLKFHENRYRD 141
           SN+    P  E  +++ +RDE + N+    N YRD
Sbjct: 40  SNSRLSTPPTEFADARQSRDEAIENVMADPNNYRD 74


>Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical
           protein F28G4.5 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 567 YLNTNKYIYIIRNIFVLFIYYNLLFFFKLISKTQCGYVT*VIIILNI 427
           YL  +  +Y++  +F++ +Y++      L++    G +  V I+ NI
Sbjct: 424 YLGADTQLYLVAPVFLIGLYFSFAIGTALLAAATIGSIITVYILYNI 470


>Z75553-5|CAA99950.2|  533|Caenorhabditis elegans Hypothetical
           protein ZC443.5 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -3

Query: 546 IYIIRNIFVLFIYYNLLFFFKLISK 472
           I ++  + ++FIY+ LLF FKL+++
Sbjct: 499 IVMLALLVLVFIYFTLLFIFKLVAR 523


>Z75953-4|CAJ85747.1|  294|Caenorhabditis elegans Hypothetical
           protein F57F5.4b protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  AQGLYNHSTVTESDDEEEINVT*RRWWDCFGDVTITVFVKFQI 173
           +QG+YNH TV  S D +EI +    +   + +V+ +  +K  +
Sbjct: 57  SQGIYNHITVRVSTDPDEILI--NAFGQLYSEVSASSLIKVDL 97


>Z75953-3|CAB00100.1|  611|Caenorhabditis elegans Hypothetical
           protein F57F5.4a protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  AQGLYNHSTVTESDDEEEINVT*RRWWDCFGDVTITVFVKFQI 173
           +QG+YNH TV  S D +EI +    +   + +V+ +  +K  +
Sbjct: 374 SQGIYNHITVRVSTDPDEILI--NAFGQLYSEVSASSLIKVDL 414


>AF166171-1|AAD49860.1|  611|Caenorhabditis elegans
           adducin-head-domain-related protein protein.
          Length = 611

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 45  AQGLYNHSTVTESDDEEEINVT*RRWWDCFGDVTITVFVKFQI 173
           +QG+YNH TV  S D +EI +    +   + +V+ +  +K  +
Sbjct: 374 SQGIYNHITVRVSTDPDEILI--NAFGQLYSEVSASSLIKVDL 414


>AF101307-3|AAC69212.2|  315|Caenorhabditis elegans Hypothetical
           protein F41H8.2 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 498 LFFFKLISKTQCGYVT*VIIILNIAVLSEIYRKILYFHMAT 376
           LFF  +  +   GY +  +I+  IAVL  I+   LY+H  T
Sbjct: 120 LFFPSIFRRMDLGYYSNCVIL--IAVLCAIFDDFLYWHTTT 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,477,985
Number of Sequences: 27780
Number of extensions: 343959
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)