Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20763
         (794 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex...    30   1.5  
At3g52450.1 68416.m05768 U-box domain-containing protein similar...    28   6.2  
At3g10930.1 68416.m01318 expressed protein                             28   6.2  
At3g55350.1 68416.m06147 expressed protein                             28   8.2  

>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 956

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -1

Query: 176 PNLKFHENRYRDVTKTIPPSPL-RNIDLLFVVALRDGAVVVETLG 45
           P+LKF + RY D    +PP    +++D +F+   R  + + ET+G
Sbjct: 192 PSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNNRFESTIPETIG 236


>At3g52450.1 68416.m05768 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 435

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 737 TSQLTAVNF-DLCQNKMSPYFFANTTSVNTVFLKLL*HL*TANTIIYVFFNN 585
           +S L++ N  D+CQ+ M    F ++ S+    L +L HL T+ T +    NN
Sbjct: 157 SSSLSSSNLNDMCQSNMLENRFDSSRSLMDEALSVLYHLDTSETALKSLLNN 208


>At3g10930.1 68416.m01318 expressed protein
          Length = 101

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = -3

Query: 582 LDYCHYLNTNKYIYIIRNIFVLFIYYNLLFFFK--LISKTQCGYVT*VIIILNIAVLSEI 409
           LD    L T++   I+  +F    Y+ L  FF+  LI + Q      + II+N+  ++EI
Sbjct: 11  LDPARKLTTSRLSTILSRVFCPNSYFFLFLFFRDSLIFRFQ------IEIIVNVTCITEI 64

Query: 408 YRKILYFHMATFGS 367
           Y + L      FG+
Sbjct: 65  YSRSLGKMRILFGN 78


>At3g55350.1 68416.m06147 expressed protein
          Length = 406

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 336 ELRKFVFGFSYFQMLPYENTEFFGKFQTRPQ 428
           ELR+++ G S F +LP+  T + GK  + PQ
Sbjct: 271 ELREYIVGDSGFPLLPWLLTPYQGKPTSLPQ 301


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,116,184
Number of Sequences: 28952
Number of extensions: 299278
Number of successful extensions: 737
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)