Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20762
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530     32   0.40 
04_04_0593 - 26480036-26481438,26481915-26482083                       30   2.2  
04_04_0768 - 27954149-27954911,27954955-27955328                       29   2.8  
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401...    29   3.8  
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204     29   5.0  
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    29   5.0  
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694...    28   6.6  
03_03_0189 - 15287429-15287437,15288006-15288359                       28   8.7  

>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
          Length = 519

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 533 RPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKKRLQALQV 703
           RP  N   GD    E  + E+G   RK+    + + + +PE N   DLK+++  L+V
Sbjct: 349 RPKVNPF-GDAKPREVVLQEKGKDWRKIDLELEHRRIDRPETNEEKDLKEQINLLRV 404


>04_04_0593 - 26480036-26481438,26481915-26482083
          Length = 523

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 345 ETRPAANQAAGDVASLEKAIAEQGDAVRKLKST-TKDKSVW 464
           E R    Q +   A +E+ IAE  +A   LKST ++DK+VW
Sbjct: 234 EARAVLLQISESEAEVEERIAEIEEAANLLKSTKSEDKAVW 274


>04_04_0768 - 27954149-27954911,27954955-27955328
          Length = 378

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 342 AETRPAANQAAGDVASLEKAIAEQGDAV-RKLKSTTKDKSVWQPEVE 479
           A+ RP A + +    SL KA+  + DAV  KL +      VWQ ++E
Sbjct: 2   AKPRPRAEEISRPSRSLSKAVRRRADAVSAKLAARGLGAFVWQKKLE 48


>01_04_0038 -
           15339047-15339230,15339683-15339741,15340031-15340160,
           15340248-15340498,15340632-15341225,15342050-15342511
          Length = 559

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +2

Query: 503 AHEAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKK 682
           A + +K+ +  PA +++  D+ +    + E+GD V +LKA+   K      V  L   K+
Sbjct: 207 AEKVEKELKENPAPSES--DIEAARVVVKEKGDAVAQLKAAKASKQEITAAVAELNKAKE 264

Query: 683 RLQALQ 700
            +  L+
Sbjct: 265 NVSRLE 270


>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
          Length = 546

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 530 TRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKKRLQALQVK 706
           +RP  N   G+    E  + E+G   RK+    + +AV +PE N    LK+ +  L+ K
Sbjct: 353 SRPKVNPF-GNAKPREVVLQEKGKDWRKIDLELEHRAVNRPETNEERILKEEINLLKEK 410


>03_02_0594 -
           9695616-9696042,9696646-9697260,9697410-9697717,
           9700145-9700235,9700698-9700759,9701256-9702962,
           9703789-9703870,9703972-9704057,9704855-9704968,
           9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 14  RKAPTEPREPQAPAVPAA-GSRHRET 88
           R AP  PR P APA PAA GSR+R T
Sbjct: 31  RAAP--PRIPSAPAPPAAGGSRYRPT 54


>03_05_0882 +
           28467691-28467730,28468386-28468675,28469262-28469411,
           28470126-28470214,28470331-28470440,28470545-28470639,
           28471110-28471162,28471374-28471539,28471909-28472001,
           28472304-28472432,28472549-28472668,28472862-28472942,
           28473495-28473602,28473895-28474038,28474120-28474218,
           28474300-28474379,28474830-28474922,28475197-28475320
          Length = 687

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = +2

Query: 548 QAAGDVASLEKAIAEQGDKVRKLKA-STKDKAVWQPEVNVLLDLKKRLQA 694
           QA   V +++K       ++ +L+  S +D+A  + EVN+LLD  +R QA
Sbjct: 200 QATESVKNMQKLHESAQSQLFELRTQSEEDRAAKETEVNLLLDEVERAQA 249


>03_03_0189 - 15287429-15287437,15288006-15288359
          Length = 120

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 518 KQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDL 676
           +  ET  AA+  A  V     A+A  GDK  + KAST  + +  P  N+ +D+
Sbjct: 44  QHCETMVAADALAFHVQPKRHAVATDGDKQIQCKASTSAETLC-PRRNLAVDV 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,022
Number of Sequences: 37544
Number of extensions: 232457
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)