Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20762
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)                44   1e-04
SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   2e-04
SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041)                35   0.058
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41)                      30   1.7  
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   30   2.2  
SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)                 29   5.1  
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               28   8.9  
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  28   8.9  

>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 488 RAEETAHEAQKQAETRPAANQAAGDVASLEKAIAE---QGDKVRKLKASTKDKAVWQPEV 658
           + E+      K A   PA  +   D A++EK + E   QGDKVR LK    DK     EV
Sbjct: 400 KREQANKSNNKNANAEPAQAKPLADPAAVEKLMGEITQQGDKVRTLKTGGADKGTVDAEV 459

Query: 659 NVLLDLK 679
            VLL LK
Sbjct: 460 AVLLKLK 466


>SB_50408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
 Frame = +2

Query: 536 PAANQAA-GDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKKRLQALQVK 706
           PA   A+   + +L+  + +QG+KVR LK +  +KAV   EV  LL+LKK+L   + K
Sbjct: 474 PAPGAASPATIEALQAEVTQQGEKVRSLKTNKAEKAVIDAEVTRLLELKKKLSLAEGK 531


>SB_9709| Best HMM Match : WHEP-TRS (HMM E-Value=0.0041)
          Length = 83

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 19/48 (39%), Positives = 29/48 (60%)
 Frame = +2

Query: 494 EETAHEAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDK 637
           ++ A +  KQAE+ PA ++AA ++ +    I +QGDKVR LK     K
Sbjct: 39  KQEAKQPGKQAESAPALSEAAQELLA---TITQQGDKVRSLKTQGAHK 83


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/49 (40%), Positives = 31/49 (63%)
 Frame = +2

Query: 563 VASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKKRLQALQVKK 709
           +++L K++ EQGD VRKLK   +DKA        + +LK R +AL+ K+
Sbjct: 10  LSNLRKSVKEQGDLVRKLK---EDKAPENDVEIAIKELKARKKALEKKE 55



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 381 VASLEKAIAEQGDAVRKLK 437
           +++L K++ EQGD VRKLK
Sbjct: 10  LSNLRKSVKEQGDLVRKLK 28


>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1967

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = +2

Query: 509  EAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKA 640
            +AQKQA    + ++ +G +  +E+ + E  DK+ KL+ +  DKA
Sbjct: 1202 DAQKQA-IEESRSEESGIIGEMEEKLKESKDKISKLEGTLNDKA 1244



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
 Frame = +2

Query: 479  EAVRAEETAHEAQKQAETR---------PAANQAAGDVASLEKAIAEQGDKVRKLKASTK 631
            +  +A E AH + K+AET+          A  ++   + SL+  I ++ D + K+KAS K
Sbjct: 1242 DKAKALEKAHLSLKEAETKLEEMSTNNVKAVEESNEKITSLKALINQKDDALEKIKASLK 1301

Query: 632  DKAVWQPEVN-VLLDLKKRLQALQVK 706
            +      E+N  L +++K   AL+ K
Sbjct: 1302 EAEERFQELNRTLEEVQKEKNALESK 1327


>SB_7791| Best HMM Match : SSDP (HMM E-Value=0.41)
          Length = 901

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = +2

Query: 539 AANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKKRLQALQVKK 709
           A   +  DVASL +A  +QG++ ++ + S  ++ + Q ++     L++ LQ  Q++K
Sbjct: 647 AQGDSCSDVASLLQASLQQGNQSQRQQLSLHNQQMQQQQIQQQQQLQQLLQHQQLQK 703


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 479 EAVRAEETAHEAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDK 637
           E  RAEE   EA+++AE   AA + A     L +   ++ ++ RKL+A  K+K
Sbjct: 252 EKRRAEE---EAKRKAEEEKAAREKAEMEEKLRRLKLQEKEEKRKLEAEKKEK 301


>SB_23775| Best HMM Match : Tropomyosin (HMM E-Value=0)
          Length = 442

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 479 EAVRAEETAHEAQKQAETR--PAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQP 652
           +A + +E     QK+ + R    A +   +   LEK   E+ D++ K +   ++K   + 
Sbjct: 336 KAAKEKERLEAKQKKEQERLEKQAEKEKKEKERLEKKQREEKDRLEKKEKKEEEKRKKEE 395

Query: 653 EVNVLLDLKKR 685
           E+N  ++ KK+
Sbjct: 396 EINAKIEEKKK 406


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +2

Query: 428 KIEVDNER*VSMATGG*EAVRAEETAHEAQKQAETRPAANQAAGDVASLEKAIAEQGDKV 607
           K E+D+ +     +G  ++  +  +   +Q++++T        GDV   + A +  G+K 
Sbjct: 7   KPEIDDSKANGHMSG--DSQSSSTSGKPSQQESQTELGQKIEKGDVEGEQTAASTDGEKS 64

Query: 608 RKLKASTKDKAVWQPE 655
            + K + KDK   Q E
Sbjct: 65  SQQKENPKDKEQLQKE 80


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/76 (23%), Positives = 36/76 (47%)
 Frame = +2

Query: 428 KIEVDNER*VSMATGG*EAVRAEETAHEAQKQAETRPAANQAAGDVASLEKAIAEQGDKV 607
           K E+D+ +     +G  ++  +  +   +Q++++T        GDV   + A +  G+K 
Sbjct: 285 KPEIDDSKANGHMSG--DSQSSSTSGKPSQQESQTELGQKIEKGDVEGEQTAASTDGEKS 342

Query: 608 RKLKASTKDKAVWQPE 655
            + K + KDK   Q E
Sbjct: 343 SQQKENPKDKEQLQKE 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,625
Number of Sequences: 59808
Number of extensions: 250224
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)