Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20762
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    36   0.022
AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High inciden...    28   7.8  

>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical
           protein ZC434.5 protein.
          Length = 1149

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +2

Query: 482 AVRAEETAHEAQKQAETRP---AANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQP 652
           A+    T  EA+K  +  P   AA+    D   L  +I +QG  VR LK         + 
Sbjct: 700 AIPDGHTGKEAEKPPKGAPVSAAASSGGSDALQLYNSIEQQGGIVRDLKTKDAKSQATKD 759

Query: 653 EVNVLLDLKKRLQAL 697
            +  LLDLKK+ + L
Sbjct: 760 AIAKLLDLKKKYKEL 774


>AF003136-10|AAK21378.2| 1281|Caenorhabditis elegans High incidence
           of males (increasedx chromosome loss) protein 1, isoform
           a protein.
          Length = 1281

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 506 HEAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTK 631
           HE ++Q E +       GDV  +E  IA    ++++ +  TK
Sbjct: 419 HELRRQKEHQERVKAKEGDVRRIETQIATLAQRIKETEEETK 460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,027
Number of Sequences: 27780
Number of extensions: 184489
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)