Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20762
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04880.1 68416.m00530 DNA-damage-repair/toleration protein (D...    32   0.34 
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ...    31   0.78 
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ...    31   0.78 
At1g13020.1 68414.m01510 eukaryotic translation initiation facto...    31   1.0  
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    28   7.2  
At3g26400.1 68416.m03292 eukaryotic translation initiation facto...    28   7.2  

>At3g04880.1 68416.m00530 DNA-damage-repair/toleration protein
           (DRT102) identical to DNA-damage-toleration protein
           DRT102 SP:Q05212 from  [Arabidopsis thaliana]; contains
           Pfam profile: PF02502 ribose/galactose isomerase
          Length = 310

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 642 TALSFVEAFNFRTLSPCSAIAFSKLATSP 556
           T LS  +A N R++S C+ +AFS + TSP
Sbjct: 93  TCLSVEDAVNARSISNCNVLAFSGIKTSP 121


>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 765

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 21/69 (30%), Positives = 38/69 (55%)
 Frame = +2

Query: 503 AHEAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKK 682
           A +A++Q + R A N+    +  L  ++  + +K+  L+ S  DK        +L DLKK
Sbjct: 217 AMDAERQ-QLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKD------QILEDLKK 269

Query: 683 RLQALQVKK 709
           +LQA++ +K
Sbjct: 270 QLQAVEERK 278


>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
           protein contains Pfam profile PF01465: GRIP domain;
           supporting cDNA gi|20303028|gb|AF499634.1|
          Length = 788

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 21/69 (30%), Positives = 38/69 (55%)
 Frame = +2

Query: 503 AHEAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKK 682
           A +A++Q + R A N+    +  L  ++  + +K+  L+ S  DK        +L DLKK
Sbjct: 217 AMDAERQ-QLRSANNKLRDTIEELRGSLQPKENKIETLQQSLLDKD------QILEDLKK 269

Query: 683 RLQALQVKK 709
           +LQA++ +K
Sbjct: 270 QLQAVEERK 278


>At1g13020.1 68414.m01510 eukaryotic translation initiation factor,
           putative (EIF4B5) eukaryotic initiation factor 4B
           (GI:6739522) {Arabidopsis thaliana}; EST gb|T22808 comes
           from this gene
          Length = 549

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 488 RAEETA-HEAQKQAETRPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNV 664
           R+E +A +  +   + RP  N   GD    E  + EQG   RK+ +  + + V +PE   
Sbjct: 344 RSESSALNNVENVVKPRPKVNPF-GDAKPREVLLEEQGKDWRKIDSELEHRRVDRPETEG 402

Query: 665 LLDLKKRLQALQVK 706
              LK+ ++ L+ K
Sbjct: 403 ERMLKEEIEELRKK 416



 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +3

Query: 321 LTEAQKQAETRPAANQAAGDVASLEKAIAEQGDAVRKLKSTTKDKSVWQPEVE 479
           L   +   + RP  N   GD    E  + EQG   RK+ S  + + V +PE E
Sbjct: 350 LNNVENVVKPRPKVNPF-GDAKPREVLLEEQGKDWRKIDSELEHRRVDRPETE 401


>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 479 EAVRAEETAHEAQKQAETRPAANQAAGD-VASLEKAIAEQGDKVRKLKASTKDK 637
           EA+ A +   E+ K+ ET     QAA + VA L+ A+  +  +   LKA  + K
Sbjct: 496 EAIEARKVEEESLKEQETLVPQEQAAREKVAELKSAMNSEKSQNEVLKAVLRAK 549


>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
           4B, putative/ eIF-4B, putative similar to eukaryotic
           initiation factor 4B [Arabidopsis thaliana] GI:6739518
          Length = 532

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 533 RPAANQAAGDVASLEKAIAEQGDKVRKLKASTKDKAVWQPEVNVLLDLKKRLQALQVK 706
           RP  N   GD    E  + EQG   RK+    + + V +PE      LK+ ++ L+ K
Sbjct: 346 RPKVNPF-GDAKPREVLLEEQGKDWRKMDLELEHRRVDRPETEEEKMLKEEIEELRKK 402


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,690,506
Number of Sequences: 28952
Number of extensions: 174122
Number of successful extensions: 506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)