Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20759
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    31   0.25 
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.1  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    27   3.1  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    26   7.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   9.4  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  

>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 72  DKQY*VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPPPAY 194
           +K+  VV EK   P  + T     E  PSE Y+  EPPP Y
Sbjct: 262 NKEVNVVEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -1

Query: 545 ILDSAWLSASSLRDWVVKMTAGSSQVTLKTAWAVLHAKRGHLLVAKAHPLP 393
           ++DS+ L   S++D+     A +   +  T ++VLHA+    +  + H  P
Sbjct: 752 VIDSSNLQTDSVKDYSEVSRADNLDASSDTIFSVLHAENEASITKEVHSTP 802


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 111 PDSMATITMKPEYPPSEVYSTSEPPP 188
           P   +T  + P  PP+   STS PPP
Sbjct: 293 PTGNSTTPVTPTVPPTSTSSTSTPPP 318



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 111 PDSMATITMKPEYPPSEVYSTSEPPP 188
           P   +T  + P  PP+   STS PPP
Sbjct: 347 PTGNSTTPVTPTVPPTSTSSTSTPPP 372


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 99  KEHQPDSMATITMKPEYPPSEVYSTS 176
           + +  DS +TI  +PEYPP   +++S
Sbjct: 306 RRNSHDSNSTIICEPEYPPDTSFNSS 331


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 156 SEVYSTSEPPPAYRHRVSTSVQIAKIAALTVVAPPSSWE 272
           S +YST  P P+        V   +    TVV  PS W+
Sbjct: 82  SRLYSTETPTPSKVKEAPKQVAAEETKPTTVVKKPSIWQ 120


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 178 SDVLYTSEGGYSGFIVIVAIESGWCSFSIT 89
           S V    +G Y+GFIV++A+ S    F ++
Sbjct: 211 SSVNSVGDGTYAGFIVLMAVGSALALFMVS 240


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 158 RRRIFRLHSYCSHRVWLVFFFHHDLILFIKIYL 60
           RRRIFR H      +W+  FF   L++  +IY+
Sbjct: 32  RRRIFRPHFSQFWTIWMK-FFSIALVIITQIYV 63


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 108 QPDSMATITMKPEYPPSEVYSTSEPP 185
           QP + +T+   P  PPS  Y+T++PP
Sbjct: 86  QPGNASTMYASP--PPSSNYNTAKPP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,703
Number of Sequences: 5004
Number of extensions: 60924
Number of successful extensions: 212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)