Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20759
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443...    30   2.4  
12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638     29   3.2  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    29   4.3  
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494...    29   5.6  
12_02_1197 + 26915933-26916298                                         28   7.4  
02_05_1006 + 33448476-33448915,33449016-33449083,33449681-334497...    28   7.4  
02_05_0190 - 26592452-26592693,26592911-26593004,26593425-265936...    28   7.4  
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689...    28   9.8  
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    28   9.8  
01_06_1341 - 36434098-36436080                                         28   9.8  

>02_01_0597 -
           4433105-4433467,4433671-4433860,4434569-4434786,
           4434882-4436556,4437137-4438113
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 548 TKTNCRKLTTIRMTHQTRV--MRVLSPTVLLKRTTNLKRLDRCSNCLFSLTLMSWRALS 718
           + T C+ L  +   H+  +   +++  ++    TT+ K +D CSNC  S +L    A+S
Sbjct: 297 SSTGCKDLEAMIKEHEKFIGDQKIIMQSLSKDVTTSKKLVDDCSNCQLSASLRPHDAVS 355


>12_02_0416 - 18891945-18892319,18892416-18892550,18892634-18893638
          Length = 504

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 548 TKTNCRKLTTIRMTHQTRVMRVLSPTVLLKRTTNLKRLDRCSNCLFSLTL 697
           T T  + ++ +R+T   R MR+L+  + +     +  L RC  CL  L L
Sbjct: 330 TTTVVKGVSVVRLTEAVRTMRILAINMFVLNLAKVIDLMRCFPCLEKLYL 379


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 MKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 221
           M P  PP  +++   PPP + H  +T+V+
Sbjct: 457 MFPAAPPMSMFAPPPPPPPFPHAAATAVE 485



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 105 HQPDSMA-TITMKPEYPPSEVYSTSEPPPAYRHRVSTS 215
           H+ D+ A T T+    PPSE  +   PPPA     +TS
Sbjct: 244 HRLDTAAATATVAQRLPPSEARAPDAPPPAATATATTS 281


>03_05_0780 +
           27646936-27647084,27647168-27647289,27649380-27649458,
           27650346-27650427,27650483-27650600,27650695-27651050,
           27651404-27652222,27652846-27653265,27653426-27653437
          Length = 718

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = +3

Query: 87  VVMEKEHQPDSMATITMKPEYPPSEVYSTSEPP--PAYRHRVSTSVQIAKIAALTVVAPP 260
           + +   H+ +   TI + P  P   V++   PP  P   HR ST+ Q          APP
Sbjct: 294 IFLNDSHETEEELTIVVGPARP-DWVFTYRTPPANPRLTHRCSTTTQPLPTCGTPAPAPP 352

Query: 261 S 263
           +
Sbjct: 353 A 353


>12_02_1197 + 26915933-26916298
          Length = 121

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 184 GGSDVLYTSEGGYSGFIVIVAIESGW 107
           GG DVL  + GG    +++VA ES W
Sbjct: 3   GGEDVLVVAPGGGRDALLLVAQESAW 28


>02_05_1006 +
           33448476-33448915,33449016-33449083,33449681-33449751,
           33449905-33450156,33450473-33450636,33450731-33450773,
           33451044-33451161,33451384-33451481,33451550-33451594
          Length = 432

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 128 CSHRVWLVFFFHHDL-ILFIKIYLLLVS 48
           C H+ WL +  HH++ ILF+K  L L++
Sbjct: 403 CFHKSWLRYNAHHNIQILFVKHNLRLIT 430


>02_05_0190 -
           26592452-26592693,26592911-26593004,26593425-26593656,
           26594660-26595066
          Length = 324

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +1

Query: 298 SSSFIMPSARAAGCNARPRTRFGRQSLRK*CPGSG*AFATSKC 426
           S+S   P A ++    RPRTR G + LR   P    A A + C
Sbjct: 33  STSATSPVAASSSSGGRPRTRSGGRLLRATSPPPPSAIAAAAC 75


>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
            6899245-6899386,6899951-6900020,6900077-6900216,
            6900291-6900365,6901083-6904723
          Length = 1448

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -1

Query: 170  AVYF-RRRIFRLHSYCSHRVWLV 105
            AV+F  R++ RLH +CSH V+++
Sbjct: 1233 AVHFPNRKMRRLHEFCSHSVFVI 1255


>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 224 REDCSTNSGRSSFILGTFILASSWVAA 304
           R  CS + GR   +L   ++A SWVAA
Sbjct: 2   RRRCSGSHGRQLLLLYWLVIACSWVAA 28


>01_06_1341 - 36434098-36436080
          Length = 660

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +3

Query: 141 PEYPPSEVYSTSEPP--PAYRHRVSTSVQIAKIAALTVVAPPSS 266
           P  PP+ ++  S P   P  R RVS S  +A +A+     PP++
Sbjct: 6   PASPPASLFHLSRPAAGPRARPRVSRSRCVASLASQPPTPPPAN 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,065,342
Number of Sequences: 37544
Number of extensions: 471983
Number of successful extensions: 1540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)