Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20759
(794 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 29 4.3
SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 29 4.3
SB_20868| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20) 29 4.3
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41) 29 5.7
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011) 29 5.7
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 28 7.6
SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 7.6
>SB_49633| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1291
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +3
Query: 180 PPPAYRHRVSTSVQIAKIAALTVVAPPSSWEPLYWLR 290
P P H + V + ++ ALT+ PP + ++W R
Sbjct: 688 PEPVCDHLLQRRVCVERLHALTMSLPPKTHNTMHWFR 724
>SB_48526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 111 PDSMATITMKPEYPPSEVYSTSEPPPAYRHRVS 209
PD AT + PEY + +PPP Y ++
Sbjct: 28 PDMPATFQIPPEYTVEDPIKIDQPPPPYMDTIT 60
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 108 QPDSM-ATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQIAK-IAALTVVAPPSSWEP 275
+P S+ A+I+ KP + V T+ P P S SV +A + A +VVA P S EP
Sbjct: 151 EPSSVVASISFKPSAAGASV-PTAPPVPVVSATFSPSVVVASALVAPSVVASPISSEP 207
>SB_20868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 125
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 159 EVYSTSEPPPAYRHRVSTSVQIAKIAALTVVAPPSSW 269
++YST+EP A+ R+S + I + + PP S+
Sbjct: 57 DIYSTNEPQGAFHQRISFCLDIYNQSVKAMRFPPKSY 93
>SB_3100| Best HMM Match : SCP (HMM E-Value=1.5e-20)
Length = 191
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 725 TTKKGRMNCVWSV*R 769
T+KKGRMNC+W V R
Sbjct: 136 TSKKGRMNCLWVVAR 150
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 447 RPCCLQCYLRRASRHLHDPVSQRRRTQPCRVQNKRRQI 560
R C YL+ S HLH ++ RR +NKRR+I
Sbjct: 841 RTDCRAEYLQATSEHLHLQIAICRRPASKMEENKRREI 878
>SB_28322| Best HMM Match : Ion_trans (HMM E-Value=1.6e-41)
Length = 263
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/61 (26%), Positives = 32/61 (52%)
Frame = -3
Query: 717 ESARQLIKVKLNRQFEHRSNRFKFVVLFSRTVGLRTLITRVW*VILIVVNFLQFVFVYFG 538
E+ +LI KLN F N F F+++ + VG+ + + +++++ L FV+ G
Sbjct: 81 EAILKLIAFKLN-YFRDYWNVFDFIIVVTTLVGVLLELVQALPYVVMLIAMLFFVYAVIG 139
Query: 537 L 535
+
Sbjct: 140 M 140
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 99 KEHQPDSMATITMKPEYPPSEVYSTSEPPPAYRHRVSTSVQ 221
+ H P S + T +P PP +T++ PPAY R S ++Q
Sbjct: 91 RPHTPPSCQSNTPRPLTPPPRQSNTTQ-PPAYPPRQSYALQ 130
>SB_42947| Best HMM Match : 7tm_1 (HMM E-Value=0.00011)
Length = 380
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = -3
Query: 588 VILIVVNFLQFVFVYFGLGMVECVVFERLGREDDGWLVSGNTEDSMGG 445
V +I N + FVY G F R+ R DDG+ +G D G
Sbjct: 313 VCMIYTNAVINAFVYAGFNSEFRRTFRRIYRRDDGFSSNGGNRDRRRG 360
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -1
Query: 413 AKAHPLPGHHFRRLCLPKRVLGRALHPAALADGM---MNELLPNSKPI 279
A+ H LP H + K LGR L+ +L G+ ++++LPN K +
Sbjct: 533 ARRHELPKHITKVTISEKTRLGRKLYKCSLMKGVKRQVSDVLPNIKSV 580
>SB_31112| Best HMM Match : Dynein_heavy (HMM E-Value=0)
Length = 2532
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +2
Query: 293 WVAARSSCHQLEQLDAMLDQ------ELALEGRAYGNDALVADEPLPLANAHALHGVPPM 454
W ARS+ + E+LD + ++ +L LEG G +PL N + + + M
Sbjct: 336 WCNARSNAKEREELDRLFEKYVPASVDLILEGILDGKQGKKLKTIIPLTNLNMVEQLSHM 395
Query: 455 LSSVL 469
L ++L
Sbjct: 396 LDALL 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,479,162
Number of Sequences: 59808
Number of extensions: 498680
Number of successful extensions: 1367
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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