Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20758
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0501 + 19742007-19742143,19742253-19742398,19742559-197425...    29   3.7  
10_03_0014 - 7060587-7060730,7060813-7060981,7061444-7061613,706...    28   6.5  
05_05_0344 + 24237250-24237687                                         28   8.6  
03_02_0407 - 8187956-8188099,8188203-8188371,8188456-8188625,818...    28   8.6  

>12_02_0501 +
           19742007-19742143,19742253-19742398,19742559-19742596,
           19742715-19742765,19743010-19743125,19743348-19743447,
           19743537-19743572,19743724-19743774,19743906-19744029,
           19744319-19744444,19744572-19744729
          Length = 360

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 698 FLVWFLMGNALLVHRTSSMQRATSC 624
           FLVW L+ +ALL+ RT SM++   C
Sbjct: 126 FLVWQLIFSALLLGRTYSMRQIIGC 150


>10_03_0014 -
           7060587-7060730,7060813-7060981,7061444-7061613,
           7061701-7061879,7061978-7062043,7062394-7062567,
           7062669-7062967,7063243-7063343,7063600-7063684,
           7063797-7063947,7064267-7064451,7065599-7065786
          Length = 636

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 557 LQHT-VVYRHVSCYRALVNFSVDGMRRYLATWAVCLFAVYL 438
           L H   +Y  +S Y ALV  + DG++   AT++ C  A ++
Sbjct: 460 LSHAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFI 500


>05_05_0344 + 24237250-24237687
          Length = 145

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +2

Query: 233 RAVCFLKICAFSVSCVSSLAVPFILVERERKARLLGYCCFVFMIFFAA 376
           R + ++  C  S SC S+L +   + E    AR+L  C  VF+I FAA
Sbjct: 50  RTILYMHGC--SASC-SALRLTKDIAENNHGARVLVACTEVFLIVFAA 94


>03_02_0407 -
           8187956-8188099,8188203-8188371,8188456-8188625,
           8188737-8188915,8189014-8189079,8189171-8189344,
           8189593-8189891,8190136-8190236,8190328-8190412,
           8190527-8190680,8190781-8190986,8192403-8192647
          Length = 663

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 542 VYRHVSCYRALVNFSVDGMRRYLATWAVCLFAVYL 438
           +Y  +S Y ALV  + DG++   AT++ C  A ++
Sbjct: 493 MYHFISGYTALVAGTEDGIKEPQATFSACFGAAFI 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,657,765
Number of Sequences: 37544
Number of extensions: 368987
Number of successful extensions: 795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)