Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20758
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)                     29   3.8  
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.8  

>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
          Length = 806

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -2

Query: 678 GECASCAPYFVDAAGDILSTMRTEQVSAEHVNVWWVRALIVTAYSSLSACFLLPCAS*FL 499
           G+ +  +P  +  AG + + ++    S   V  +    L+ T   +  A F LP    + 
Sbjct: 55  GQSSKDSPAMLAGAGAVCTGLKLCTPSERSVFYY----LVKTGRGAGFARFQLPETQCYF 110

Query: 498 CGRDAALSRYVGGVP-VCCV 442
           C   A  S Y+G VP +CCV
Sbjct: 111 CASTAFNSVYIGPVPTICCV 130


>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -1

Query: 571 SCSDRYSIQ*FIGMFP-VTVR*LISLWTGCGVISLRGRCACLLCTYNILVCTRYRSDLF 398
           SCSD   +  F+     V+V  L+ L   CG+  L G+   LL  +N   C RY  ++F
Sbjct: 531 SCSDGQDV--FLSREEKVSVEALVGLM--CGIPHLNGKPKVLLLIHNRTSCNRYGDEIF 585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,742,343
Number of Sequences: 59808
Number of extensions: 471199
Number of successful extensions: 1130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)