Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20758
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    28   7.7  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
           protein F54G2.1b protein.
          Length = 972

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 540 NYCML*RSEHEPTIH*HAQLTPVQFSLLTRCRPLHRRSTVHKKRIPHQKPY 692
           +YC     EH        + +  +FS L +C    R S  ++K +P+++P+
Sbjct: 455 SYCKRMMIEHREKFTPSKRNSGEEFSSLIKCMRALRESPFYQKYLPYKRPF 505


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
           protein F54G2.1a protein.
          Length = 1126

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 540 NYCML*RSEHEPTIH*HAQLTPVQFSLLTRCRPLHRRSTVHKKRIPHQKPY 692
           +YC     EH        + +  +FS L +C    R S  ++K +P+++P+
Sbjct: 439 SYCKRMMIEHREKFTPSKRNSGEEFSSLIKCMRALRESPFYQKYLPYKRPF 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,775,693
Number of Sequences: 27780
Number of extensions: 354846
Number of successful extensions: 843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)