Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20758
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 137 TGTTSYIRNLF*LIQN 90
           T T SYIR+ F L+QN
Sbjct: 540 TPTDSYIRSFFELLQN 555



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 509 LAHGNRKHADKLLYAVTIRARTHHTLTCSADTCSVLIVDKMSPAAS 646
           L   N K A  +LY + +     H + C+A    V ++ K +P  S
Sbjct: 674 LTETNPKLARSVLYKIYLNTMESHEVRCTA----VFLLMKTNPPLS 715


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 656 GAQEAHSPSKTIPKTLNIMEHL 721
           G+    SP+ + P TLN+ME +
Sbjct: 22  GSTTPASPTLSTPPTLNLMEQI 43


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 247 KAHRATLLRIISYFKKLEPLNSDKC 173
           KAH+  L    SYF+KL  L S+ C
Sbjct: 48  KAHKVVLSACSSYFQKL--LLSNPC 70


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 151 YTKQTPAQRHTSEIYFN 101
           Y K TP Q+H   I  N
Sbjct: 216 YKKPTPVQKHALPIIMN 232


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,197
Number of Sequences: 438
Number of extensions: 4542
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)