Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20758
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05390.1 68416.m00589 expressed protein ; expression supporte...    29   4.1  
At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP]...    28   5.4  
At1g73000.1 68414.m08442 hypothetical protein                          27   9.5  

>At3g05390.1 68416.m00589 expressed protein ; expression supported
           by MPSS
          Length = 463

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 618 LLTRCRPLHRRSTVHKKRIPHQKPYQKP*TLWSI 719
           +L  C PL RR  + +  + +QKPY    +LW +
Sbjct: 214 MLNGCDPLPRRRCLTRASMTYQKPYPINESLWKL 247


>At4g37870.1 68417.m05356 phosphoenolpyruvate carboxykinase [ATP],
           putative / PEP carboxykinase, putative / PEPCK, putative
           similar to phosphoenolpyruvate carboxykinase
           [Lycopersicon esculentum] GI:16950587, SP|Q9SLZ0
           Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
           (PEP carboxykinase) (Phosphoenolpyruvate carboxylase)
           (PEPCK) {Zea mays}; contains Pfam profile PF01293:
           phosphoenolpyruvate carboxykinase
          Length = 671

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 542 VYRHVSCYRALVNFSVDGMRRYLATWAVCLFAVYL 438
           +Y  +S Y ALV  + DG++   AT++ C  A ++
Sbjct: 501 MYHFISGYTALVAGTEDGIKEPTATFSACFGAAFI 535


>At1g73000.1 68414.m08442 hypothetical protein
          Length = 209

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 569 RTHHTLTCSADTCSVLIVDKM-SPAASTKYGAQEAHSPSK 685
           RTHHT   S +TC+ LI  ++ +PA +     ++  +P+K
Sbjct: 38  RTHHTFPRSPNTCTSLIAHRVDAPAHAIWRFVRDFANPNK 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,291,808
Number of Sequences: 28952
Number of extensions: 306629
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)