Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20757
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)                     29   3.1  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   5.5  
SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_15085| Best HMM Match : V-set (HMM E-Value=0.0064)                  28   9.5  
SB_2152| Best HMM Match : EGF (HMM E-Value=0)                          28   9.5  

>SB_9507| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2735

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 178  HCLSLQCHQ*DTCLFSLNNHLLCC 107
            HC    CH+  TC+ SLN H+  C
Sbjct: 1902 HCNPNSCHEQATCIGSLNGHVCEC 1925


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -2

Query: 254 TPIPAMIGHLLLFRKRT-EARPPSKTPLPVFTMPSVRH 144
           TP+PA      L    T       +TPLP +T P VRH
Sbjct: 630 TPLPAYSPRTTLPANTTPRVHHSPRTPLPAYTSPRVRH 667


>SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 266 DTDATPIPAMIGHLLLFRKRTEAR 195
           D DA P+   +GHL+ +R+R+ ++
Sbjct: 244 DQDALPVERALGHLIFYRRRSYSK 267


>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2162

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 CLSLQCHQ*DTCLFSLNNHLLCC 107
           C S  CH   TCL  +NN+   C
Sbjct: 216 CASAPCHSYSTCLDGVNNYTCLC 238


>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1408

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 CLSLQCHQ*DTCLFSLNNHLLCC 107
           C S  CH   TCL  +NN+   C
Sbjct: 441 CASAPCHSYSTCLDGVNNYTCLC 463


>SB_15085| Best HMM Match : V-set (HMM E-Value=0.0064)
          Length = 224

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 264 YRCHTHTGYDWPSPSF*KEN*GKTTQ*NSTACL 166
           YRC  H  ++W S S   +  GKTT+   + C+
Sbjct: 106 YRCENHHHFEWVSYSLEFDCQGKTTRETVSVCV 138


>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1603

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 175 CLSLQCHQ*DTCLFSLNNHLLCC 107
           C S  CH   TCL  +NN+   C
Sbjct: 18  CASAPCHSYSTCLDGVNNYTCLC 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,192,600
Number of Sequences: 59808
Number of extensions: 370595
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)