Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20757
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel...    29   4.5  
At1g02230.1 68414.m00161 no apical meristem (NAM) family protein...    29   4.5  
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    28   5.9  
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ...    28   7.8  
At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to ...    28   7.8  

>At1g03060.1 68414.m00280 WD-40 repeat family protein /
           beige-related similar to BEIGE (GI:3928547) [Rattus
           norvegicus]; Similar to gb|U70015 lysosomal trafficking
           regulator from Mus musculus and contains 2 Pfam PF00400
           WD-40, G-beta repeats. ESTs gb|T43386 and gb|AA395236
           come from this gene
          Length = 3601

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 189 GWSCLSSLSKKKEMANHSRYGCGIGIA 269
           GW CL SL KK E AN S +    G+A
Sbjct: 691 GWDCLISLLKKAE-ANQSSFRAANGVA 716


>At1g02230.1 68414.m00161 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 579

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 156 WHCKDRQWSFTGWSCLSSLSKKKEM 230
           W   D Q+S TGW CLSSL +   M
Sbjct: 444 WKASD-QFSGTGWFCLSSLGESPTM 467


>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 148 DTCLFSLNNHLLCCFDCGTFRFFFCIRKPKQV 53
           + C  ++ +++LCC DC      +C   PK++
Sbjct: 503 NACQKTIRDYMLCCADCDFNLCLWCASLPKKI 534


>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 686

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 148 DTCLFSLNNHLLCCFDCGTFRFFFCIRKPKQVL 50
           D C  +   HLLCC +C     F C   PK+V+
Sbjct: 521 DICHIT-RRHLLCCEECDFRLDFRCATLPKKVM 552


>At1g31550.1 68414.m03871 GDSL-motif lipase, putative similar to
           lipase [Arabidopsis thaliana] GI:1145627; contains
           InterPro Entry IPR001087 Lipolytic enzyme, G-D-S-L
           family
          Length = 391

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +3

Query: 192 WSCLSSLSKKKEMANHS 242
           WSCLSS+ KKKE+  ++
Sbjct: 370 WSCLSSMIKKKEVVGNT 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,215,467
Number of Sequences: 28952
Number of extensions: 257381
Number of successful extensions: 514
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)