Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20756
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.0
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522... 29 2.7
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.6
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.6
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 29 4.7
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 29 4.7
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935... 28 6.2
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 28 6.2
05_03_0261 + 11214086-11214148,11215019-11215462,11216504-112166... 28 6.2
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 8.3
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 8.3
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 119 DLKSQLEGFNTSCLRDVDTNEKIVL 193
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>02_05_0599 -
30251708-30251815,30251864-30251984,30252068-30252215,
30252303-30252480,30252587-30252625,30252704-30252799,
30252879-30253030,30253336-30253722,30253836-30253940,
30254083-30254098
Length = 449
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 291 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-NVREELAP 422
GEEPA R+G G P +HRE + SH + +G +R L P
Sbjct: 6 GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 126 RVSSKASTPAVSVTSTPMKRLCFR 197
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 81 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 173
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +3
Query: 102 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL----RRPRSLYSTVSRV*FEP 269
SP + SS P +++ + P R + PL R R + V+R+ EP
Sbjct: 10 SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69
Query: 270 AEAHRDSGEEPAS 308
A R EEP S
Sbjct: 70 AMGRRQQPEEPDS 82
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 264 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 347
+P A D E +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233
>07_03_1529 +
27491963-27492465,27493045-27493154,27493384-27493510,
27494082-27494430,27494975-27495251,27496236-27496333,
27498090-27498214,27498270-27498326,27498328-27498370,
27498581-27498667,27498802-27498882,27499735-27499901,
27499987-27500098,27500188-27500390,27500473-27500607,
27501106-27501205
Length = 857
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +1
Query: 283 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVI 438
+T + PLP D+IEA + + + +E KL ++ E S D +
Sbjct: 806 QTLDTTPLPGSDSIEANRRRERGQRALEQRLAEKLAAVKSSEGTSQDASDKV 857
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 129 VSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRP---RSLYSTVSRV*FEPAEAHRDSGEE 299
++ +TPA + P +R LLK P P +S VS + + EA D
Sbjct: 177 LAESTATPASTAGLKPARRFTRSLLKNKPEEEPTASKSQDPAVSMISEDNNEASVDLALA 236
Query: 300 PASGQRRYRSGEGKEQIPER 359
P QRR+ K ++ R
Sbjct: 237 PGKPQRRFTRSLLKVKVEAR 256
>05_03_0261 +
11214086-11214148,11215019-11215462,11216504-11216666,
11218145-11218441,11218842-11218858
Length = 327
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 220 EDPEVFIRRYREFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGI 363
E+ E I++ RE +S +KH+ET+++ + + + ++ LNGI
Sbjct: 172 EEIEENIQKTREIESEIVKHSETEKEYIMKESELMKGVSIAEFELNGI 219
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 95 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 187
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 95 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 187
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,974,735
Number of Sequences: 37544
Number of extensions: 413769
Number of successful extensions: 1322
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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