Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20756
(702 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 34 0.10
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 33 0.18
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.56
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 29 2.3
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.0
At3g28770.1 68416.m03591 expressed protein 29 3.0
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 29 3.0
At1g23230.1 68414.m02906 expressed protein 29 3.0
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 29 3.9
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 3.9
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 29 3.9
At1g51900.1 68414.m05850 hypothetical protein 29 3.9
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 5.2
At3g57780.1 68416.m06436 expressed protein 28 5.2
At5g45520.1 68418.m05591 hypothetical protein 28 6.9
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa... 28 6.9
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 28 6.9
At5g42490.1 68418.m05172 kinesin motor family protein contains P... 27 9.1
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 9.1
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 33.9 bits (74), Expect = 0.10
Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Frame = +3
Query: 9 LSARIFYPLPHQKYIDSEWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 176
++ R+ P P + + S PA + PP + SP ++ +P+ S S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515
Query: 177 MKRLCFRLLKTSPLRRPRSLYSTVSRV*FEPAEAHRDSGEEPASGQRRYRSGEGKEQIPE 356
++ ++L + P+RR RSL RV H G G GK
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572
Query: 357 RHRELRS 377
RH++ RS
Sbjct: 573 RHQKARS 579
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 33.1 bits (72), Expect = 0.18
Identities = 23/65 (35%), Positives = 31/65 (47%)
Frame = +1
Query: 262 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIE 441
S L H E EK+ + + KEK E TKLK TE+ KNS+ K +E
Sbjct: 794 SDLLSHIECLEKD-IGSLSSSSLAKEKENLRKDFEK-TKTKLKDTESKLKNSMQDKTKLE 851
Query: 442 QEKSA 456
EK++
Sbjct: 852 AEKAS 856
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.5 bits (68), Expect = 0.56
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 250 REFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNSLPT 426
+E Q+K + +E+N K+ +E + + K +E + +LK T E+N
Sbjct: 772 QEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKL 831
Query: 427 KDVIEQEKSAXXXXXXXXXANVSR 498
++ IE E+ A + R
Sbjct: 832 REAIELEEKEKRLIEAFERAEIER 855
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 102 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRV*FEPAE 275
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSR
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 276 AHRDSGEEPAS 308
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 280 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 375
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 238 IRRYREFDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 414
+R E K +E EK + KDA E + NK L+ EN D K + E +++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827
Query: 415 SLPTKD 432
+KD
Sbjct: 828 KEESKD 833
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 229 EVFIRRYREFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 375
E +R +E ++ K T K + +KDA EA KE+ NG+ N D
Sbjct: 45 EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 430 PLWGASSSRTFPCASA*WDRSSRC-RSGICSFPSP 329
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2
Query: 2 RVAECTNLLSPSSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNE 181
R+A C P ++ F + S S + SL+D+ ++ +LK L+G + VDTN
Sbjct: 513 RIASCKQR-HPKWQRVE-FENSDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN- 569
Query: 182 KIVLPSAEDVATEK 223
AED A E+
Sbjct: 570 ----LDAEDRAAER 579
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 476 CYKVVVQADFSCSMT--SFVGSEFFSHVSVCFSLVGSKFSMPF 354
C++ ++ DF C F F+S V F L+ S +MPF
Sbjct: 438 CFESIIDDDFLCRACYQMFCEGFFYSSKGVNFDLICSSITMPF 480
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +2
Query: 71 SVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQKS 235
S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E S
Sbjct: 78 SLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIVSS 135
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 223 DPEVFIRRYREFDSSQLKHTETQEKNPLPDKDAIEAEK 336
DP+++IR Y E + K + T + + + D+IE K
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEGVK 399
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 223 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 104
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 259 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 408
DSS+ TE +E N L D E EKE++K L+ I + + ETCE
Sbjct: 72 DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120
>At5g45520.1 68418.m05591 hypothetical protein
Length = 1167
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 250 REFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTK 429
RE D Q ++E+ ++ + + ++ +N N + K KH E E+ SL +
Sbjct: 585 REDDQVQNYGQTSKEEKGNVEETGKQEDGDQGDGINEEANLEDGK-KHDEGKEERSLKSD 643
Query: 430 DVIEQEK 450
+V+E+EK
Sbjct: 644 EVVEEEK 650
>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 210
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 220 EDPEVFIRRYRE-FDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT 396
ED E Y E FDS+ E + L D+++ +E++ FL + DP +L +
Sbjct: 61 EDEEEINENYYEYFDSNGFGVDEDEINEFLEDQESNSNLEEEDDFLEEEDEIDPDQLSYE 120
Query: 397 E 399
E
Sbjct: 121 E 121
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = +1
Query: 274 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQE 447
K +E P P+ + + EK+ FLNG K KN +P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At5g42490.1 68418.m05172 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1087
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = +1
Query: 259 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVI 438
+S + + E Q KN ++ + K+ + LN EN ++ + TE CE NSLP +
Sbjct: 567 ESQESVNEEEQMKNE--ERKMSPSTKQAEQCLNKEENAQ-SEQQSTEDCELNSLPINNQS 623
Query: 439 E 441
E
Sbjct: 624 E 624
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 226 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 101
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,189
Number of Sequences: 28952
Number of extensions: 323682
Number of successful extensions: 1071
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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