Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20753
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   4.4  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.6  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 294 VLFISKLRIMMSYYFWNLLL 235
           V F  K+R    YYF+NL++
Sbjct: 201 VTFTIKIRRRTLYYFFNLIV 220


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 294 VLFISKLRIMMSYYFWNLLL 235
           V F  K+R    YYF+NL++
Sbjct: 201 VTFTIKIRRRTLYYFFNLIV 220


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 294 VLFISKLRIMMSYYFWNLLL 235
           V F  K+R    YYF+NL++
Sbjct: 201 VTFTIKIRRRTLYYFFNLIV 220


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 294 VLFISKLRIMMSYYFWNLLL 235
           V F  K+R    YYF+NL++
Sbjct: 201 VTFTIKIRRRTLYYFFNLIV 220


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 294 VLFISKLRIMMSYYFWNLLL 235
           V F  K+R    YYF+NL++
Sbjct: 201 VTFTIKIRRRTLYYFFNLIV 220


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -3

Query: 531 RLNILLFILVE-CWNNFL 481
           RLN+L++++V  CW   L
Sbjct: 2   RLNMLIYLIVACCWGKSL 19


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 504 VECWNNFLGYFSVFIYYRS 448
           +E WN   GY  + I ++S
Sbjct: 626 IETWNKLFGYQILLITFQS 644


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,262
Number of Sequences: 336
Number of extensions: 3093
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)