Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20753
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    32   0.095
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    27   3.6  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.3  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   6.3  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 31.9 bits (69), Expect = 0.095
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = -3

Query: 543 FRRTRLNILLFILVECWNNFLGYFSVFIYYRSVFKNEKYVVFRRSV 406
           F   R   LL IL E WNN L   SV IYY S    +   +F+  V
Sbjct: 266 FALGRAQELLLILDEYWNNHLDLRSVPIYYASSLARKCMAIFQTYV 311


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -3

Query: 528 LNILLFILVECWNNFLGYFSVFIYYRSVFKNEKYVVFRRSVARTATLF 385
           ++ L +I   CW+N+   F   ++Y S+     Y+ +  S    AT F
Sbjct: 374 MSFLFYITFYCWDNYYYSFLQVVHYTSI-TAAGYISYTYSFTSCATGF 420


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -3

Query: 537  RTRLNILLFILVECWNNFLGYFSVFIYYRSVFKNEKYVVFRRSVARTATLFVSN 376
            R R++ +  IL EC      +   + YY S    E Y+ +     R + +F+++
Sbjct: 952  RKRIDAISVILSECGFVLFNFSQPYYYYFSFLLAEMYLRYGNPSLRYSVMFLAS 1005


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -1

Query: 380 LTNLNAEAEKLIQKIKPVTPEQWESKLFLFYLFLNLES*CLI----IFGIYFLKRKKIVD 213
           L + N  A  L    KP++PE+  + L    + L++E  C+     I  +Y  ++K   D
Sbjct: 95  LLSYNRSAFDLFNSEKPLSPEKISTMLQHLQMRLSIEQQCVSGIEKIMSLYSKEQKDKTD 154

Query: 212 ILEKV 198
           ++ K+
Sbjct: 155 VIIKL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,664
Number of Sequences: 5004
Number of extensions: 50591
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)