Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20753
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0157 + 5083771-5083996,5084007-5084326,5085958-5086392,508...    29   4.9  
02_04_0583 + 24078766-24079800,24080585-24081643                       28   8.6  

>09_02_0157 +
           5083771-5083996,5084007-5084326,5085958-5086392,
           5087277-5087921
          Length = 541

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 494 GITFLDIFLSSFTTEVYLKMKNMS 423
           G+T +D FLS F  EVY +MK  S
Sbjct: 77  GVTSMDGFLSMFFPEVYRRMKGTS 100


>02_04_0583 + 24078766-24079800,24080585-24081643
          Length = 697

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 401 VLRHYLSLTNLNAEAEKLIQKIKPVTPEQWESKLFL 294
           VL  +LS   L  EAE+++QKI+    E  E  +FL
Sbjct: 574 VLLDWLSRLQLVQEAEQVVQKIRKAGEEPLEMHVFL 609


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,733
Number of Sequences: 37544
Number of extensions: 244464
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)