Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20753
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical ...    31   0.63 
AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine re...    29   4.4  
AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical...    28   5.9  

>AC026301-7|AAK68900.2| 1142|Caenorhabditis elegans Hypothetical
            protein Y54F10BM.9 protein.
          Length = 1142

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/50 (32%), Positives = 30/50 (60%)
 Frame = -3

Query: 507  LVECWNNFLGYFSVFIYYRSVFKNEKYVVFRRSVARTATLFVSNKFECRS 358
            +++C N +L YF  +I+ +  F+NE YVV+  S A  +   +++K   R+
Sbjct: 1039 VLKCTNPYLRYFKKYIFLKE-FRNEIYVVYVSSQAVDSGAEITSKNTSRA 1087


>AF125442-4|AAD12794.1|  317|Caenorhabditis elegans Serpentine
           receptor, class v protein21 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 8/30 (26%), Positives = 21/30 (70%)
 Frame = -3

Query: 489 NFLGYFSVFIYYRSVFKNEKYVVFRRSVAR 400
           +F+G F++ I+   V++N + ++FR  +++
Sbjct: 284 SFIGPFTILIFNNDVYRNVRRMIFRNKISK 313


>AC006684-10|AAF39962.2|  665|Caenorhabditis elegans Hypothetical
           protein T02H6.2 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 450 SVFKNEKYVVFRRSVARTATLFVSNKFE 367
           S+++ EK++ F+  +    TL  SNK E
Sbjct: 236 SIYEKEKFLTFKTDLTAVLTLMTSNKLE 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,146,897
Number of Sequences: 27780
Number of extensions: 274940
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)