Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20753
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   5.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   8.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.9  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 427 IFFIFKYTSVVNEDRKISKK 486
           +  I+ YTS++ E R+ SKK
Sbjct: 218 VVIIYTYTSILLEIRRRSKK 237


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 FINCLCSGYVVYKNKNLPIIENPENLF 206
           F++ + +G VVY   +   +  P NLF
Sbjct: 64  FVSAMGNGMVVYIFLSTKSLRTPSNLF 90


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 126 FINCLCSGYVVYKNKNLPIIENPENLF 206
           F++ + +G VVY   +   +  P NLF
Sbjct: 30  FVSVMGNGMVVYIFLSTKSLRTPSNLF 56


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 159 YKNKNLPIIE 188
           +KNK+LP+IE
Sbjct: 48  FKNKSLPVIE 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,416
Number of Sequences: 438
Number of extensions: 3419
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)