Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20752
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    29   0.49 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    28   1.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   3.5  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    26   6.1  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.1  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   8.0  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   8.0  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   8.0  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 206 KLGHNRDYNIALGVYLQAYSLFNRYFTNVEKITPFANTQIRGNTLFIQYD 57
           KL +  +Y I+L +Y +A    N  +TN E +T       RGN+  I+YD
Sbjct: 653 KLANAINYLISLILYPKAR---NESWTNTESLTTGITVDERGNSKLIEYD 699


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 544 CSVFG*DCFNDSLCVFLRAPEVFQRV 467
           CS  G   F+ SLC FLR P+ F R+
Sbjct: 368 CSDDG-SVFHKSLCAFLRVPKSFSRI 392


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 611 VTTTIFTTCSNSYISIFRDW 552
           +  + F TC N ++S+F +W
Sbjct: 317 IIASFFRTCLNDFVSVFPEW 336


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 24  HDTHLFSNLRPIILYEQCITPYLSICKRGNF 116
           H  H+F N +PI  +E+ ++   S C+  +F
Sbjct: 326 HYIHIFVNTQPISAFERTLSSKRSSCEYDHF 356


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 259  LESWMVATFIFFIVIWVKSLATTAIITLH*VF 164
            L S ++   IFFIV+W   L+   I++L+ V+
Sbjct: 2177 LWSIIILLLIFFIVVWAVLLSVIKILSLNNVW 2208


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
 Frame = +1

Query: 244 PSRTPVFHDAYKGWSCCN-----KKSVDFTEFLN 330
           PS   V H  Y  WS CN     K  V+F +++N
Sbjct: 425 PSVKKVHHYQYPNWSDCNSPENVKSMVEFLKYVN 458


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -3

Query: 167 VYLQAYSLFNRYFTNVEKITPFA 99
           +YL+AYS+  +YF++ + +   A
Sbjct: 488 IYLKAYSIIEKYFSDEDAVEDLA 510


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 339 PFYVQKLREIN--TFLITT*PALVSIVEYWSPGWWRHSSFSLSFGSKAWPQP 190
           P  +QK+ +    TF I +    + I E  +P  ++H  F      KAW QP
Sbjct: 61  PIRLQKIFQYYNLTFSIASAILALLIFEQVAPAIYKHGFFFSICNEKAWTQP 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,122,378
Number of Sequences: 5004
Number of extensions: 67587
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)