Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20752
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0325 + 7276650-7276770,7276979-7277055,7277146-7277188,727...    31   0.90 
06_03_0022 - 15536811-15536899,15537485-15537664,15537706-155379...    28   8.4  
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    28   8.4  

>09_02_0325 +
           7276650-7276770,7276979-7277055,7277146-7277188,
           7277276-7277333,7277922-7277991,7278202-7278670,
           7278895-7278959
          Length = 300

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 519 KQSQPNTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCP 671
           +++ P+T    P SE     + ++  NGG N A + PQ ++SL  + P  P
Sbjct: 174 ERTDPSTP--APTSESPTQGVPSNRDNGGQNEATKSPQRDDSLSRHEPLTP 222


>06_03_0022 -
           15536811-15536899,15537485-15537664,15537706-15537982,
           15538680-15538883,15539431-15539496,15539933-15539953,
           15541622-15541731,15543244-15544236,15544928-15544955,
           15545035-15545093,15545177-15545204,15545453-15545475,
           15545784-15545853,15546980-15547033,15547127-15547169,
           15548126-15548175
          Length = 764

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +3

Query: 534 NTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYH 659
           N  Q    + DG   +G  C+  GCN   EG QT   LC  H
Sbjct: 104 NMIQLNMCASDGRSVVGQRCQRLGCNNVVEG-QT--LLCKSH 142


>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 507 SESLKQSQPNTEQKTPVSEDGNVAIGTSCKNGG 605
           S+  +Q   N E K   SED +V +G    NGG
Sbjct: 364 SDIPEQQSKNEEVKESFSEDKDVVVGNELHNGG 396


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,279,914
Number of Sequences: 37544
Number of extensions: 405808
Number of successful extensions: 886
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)