Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20752
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17635| Best HMM Match : CUB (HMM E-Value=0)                         30   2.1  
SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_33492| Best HMM Match : PKD (HMM E-Value=0.0034)                    28   6.5  
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                 28   6.5  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 28   8.5  
SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)                 28   8.5  

>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
          Length = 630

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -3

Query: 701 RPKF*TFMKNRAPRVICAQRLICLRTFKCCVTTTI 597
           R  F TF+ NR PR+I  QR++ L  F  C+T  +
Sbjct: 7   RTIFRTFLFNRLPRIIALQRVLLL-LFYICLTLRV 40


>SB_8762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 176 QCYNRGCGQAFDPNDNEKDECRHHPG 253
           QC   GCGQAF  + + K   R H G
Sbjct: 130 QCRELGCGQAFTASHHLKVHSRRHTG 155


>SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 652 VHKDSFV*GPSNAVLQPPFLQLVPIATFPSSETGVFCSVFG*DCFNDSLCVFLRAPEVF- 476
           + +D    G    +L   FLQL P++     +   FC  F  +C+ D +   +   +V+ 
Sbjct: 308 IRRDDRPFGGIQLILSGDFLQLPPVSKIGEGKPKKFC--FQAECWQDCIQTTIELTQVYR 365

Query: 475 -QRVVFVTVDQQLEL 434
            Q  +FV++ Q + +
Sbjct: 366 QQDPMFVSILQNIRV 380


>SB_33492| Best HMM Match : PKD (HMM E-Value=0.0034)
          Length = 314

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 182 YNRGCGQAFDPNDNEKDECRHHPGLQYSTMLTRAGHVVIRKVL 310
           ++ G G  +DP+D     C    G++YST   R G  V  ++L
Sbjct: 55  FSSGPGD-YDPHDISPIRCLEQCGIKYSTQHYRMGDCVCARIL 96


>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 354

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 358 YVWIRYTLLCSKTP*NQHFSYYNMTSPCKHRGILESWMVATFIFFIVIWVKSLA 197
           Y WI Y L    TP  Q  +     +    R      ++AT + F+V W  S+A
Sbjct: 194 YTWIGYKLWTRHTPGEQQGTVNQRNARTASRAT--RMIIATLLAFVVCWSPSMA 245


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 358 YVWIRYTLLCSKTP*NQHFSYYNMTSPCKHRGILESWMVATFIFFIVIWVKSLA 197
           Y WI Y L    TP  Q  +     +    R      ++AT + F+V W  S+A
Sbjct: 194 YTWIGYKLWTRHTPGEQQGTVDQRNARTASRAT--RMIIATLLAFVVCWSPSIA 245


>SB_25840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -1

Query: 211 VKSLATTAIITLH*VFIFRHIRYSIDILRT*KKLPLLQILKYGVIHCSYNMIGL 50
           +K++  T + TL+   + R I  SID L+  + L L   +   +I C   +IGL
Sbjct: 611 LKNIEGTGVYTLNRSALLRTIGKSIDTLKNIEALELFAEMLTPIITCPVILIGL 664


>SB_15832| Best HMM Match : zf-C2H2 (HMM E-Value=7e-35)
          Length = 337

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 176 QCYNRGCGQAFDPNDNEKDECRHHPG 253
           +CY+ GC +A+   +N K   R H G
Sbjct: 86  KCYHEGCTKAYSRLENLKTHLRSHTG 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,989,629
Number of Sequences: 59808
Number of extensions: 496901
Number of successful extensions: 1174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)