Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20752
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    70   2e-12
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    70   2e-12
U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologu...    28   5.7  

>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 28/43 (65%), Positives = 33/43 (76%)
 Frame = +1

Query: 256 PVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKHSNVKPVEPV 384
           P FHDAYK W+CC+KKS DF  ++N KGCT  KHSN KPV+ V
Sbjct: 35  PYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKHSNEKPVDIV 77



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 24/50 (48%), Positives = 36/50 (72%)
 Frame = +3

Query: 558 SEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCC 707
           ++  ++ IG  C+N GC+T F+G +  E+ C +HPG  IFHEG+K+WSCC
Sbjct: 141 AQSADIQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHEGMKYWSCC 189



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 591 CKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCC 707
           C + GC   F+  + +   CTYHPG P FH+  K W+CC
Sbjct: 9   CYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCC 47



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 161 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGLQY 262
           D+  +QCY++GCG  FDP +N+ + C +HPG  Y
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPY 36



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +1

Query: 259 VFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 357
           +FH+  K WSCCNKK+ +F  FL   GCT  +H
Sbjct: 178 IFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 CYNRGCGQAFDPNDNEKDECRHHPG 253
           C N GC   FD + N K+ C+HHPG
Sbjct: 152 CRNNGCSTEFDGSKN-KENCQHHPG 175


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 28/43 (65%), Positives = 33/43 (76%)
 Frame = +1

Query: 256 PVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKHSNVKPVEPV 384
           P FHDAYK W+CC+KKS DF  ++N KGCT  KHSN KPV+ V
Sbjct: 35  PYFHDAYKIWTCCDKKSTDFGTWMNYKGCTRGKHSNEKPVDIV 77



 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 24/50 (48%), Positives = 36/50 (72%)
 Frame = +3

Query: 558 SEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCC 707
           ++  ++ IG  C+N GC+T F+G +  E+ C +HPG  IFHEG+K+WSCC
Sbjct: 141 AQSADIQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHEGMKYWSCC 189



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 591 CKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCC 707
           C + GC   F+  + +   CTYHPG P FH+  K W+CC
Sbjct: 9   CYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCC 47



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 161 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGLQY 262
           D+  +QCY++GCG  FDP +N+ + C +HPG  Y
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPY 36



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +1

Query: 259 VFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 357
           +FH+  K WSCCNKK+ +F  FL   GCT  +H
Sbjct: 178 IFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210



 Score = 35.1 bits (77), Expect = 0.050
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 CYNRGCGQAFDPNDNEKDECRHHPG 253
           C N GC   FD + N K+ C+HHPG
Sbjct: 152 CRNNGCSTEFDGSKN-KENCQHHPG 175


>U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical
           protein ZK563.2 protein.
          Length = 573

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 641 LICLRTFKCCVTTTIFTTCSNSYISIFRDWSFLLCIWLRLFQ 516
           +I +    CC    +  +C      I  +WSF L IW+R  Q
Sbjct: 477 IILIIAITCCFICVLQNSCKEFLPKILHNWSF-LPIWMRSLQ 517


>Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical
           protein H25K10.3 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -3

Query: 638 ICLRTFKCCVTTTIFTTCS--NSYI-SIFRDWSFLLCIWLRL 522
           +C   FK CVTT I   C+  N+Y+ ++F  W +   I++ L
Sbjct: 60  LCTPFFKLCVTTAIIDICTLLNNYLGAMFPKWGWGTGIYIFL 101


>AF047653-6|AAC04462.2|  463|Caenorhabditis elegans Hypothetical
           protein W02F12.5 protein.
          Length = 463

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = -1

Query: 574 TFPSSETGVFCSVFG*DCFNDSLCVFLRAPEVFQRVVFVTVDQQLELLLQ 425
           TF  S  GVF S+FG    N      L    VF RVV V    ++  ++Q
Sbjct: 378 TFTISNGGVFGSMFGTPIINPPQSAILGMHGVFDRVVPVNGKPEIRPIMQ 427


>AF025467-10|AAB71040.2|  154|Caenorhabditis elegans He1 homologue
           protein 1 protein.
          Length = 154

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 552 PVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPI 674
           P  +   +      K GG +   + PQTN   CTY   CP+
Sbjct: 66  PSKDTDKLKTSVRAKVGG-SAMVDFPQTNSDACTYGVKCPV 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,224,441
Number of Sequences: 27780
Number of extensions: 386388
Number of successful extensions: 1014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)