Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20752
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   1.2  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   8.7  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 180 HCTRCLSSGIFVIQ*IFYERRKNYPF 103
           HC RC S  I +   +    ++NYP+
Sbjct: 64  HCNRCTSRQIGIANTLIPFMQQNYPY 89


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 498 NTHSESLKQSQPNTEQKTPVSEDGNVAIGTS 590
           +TH + L   +  T+ K+P S D +    TS
Sbjct: 72  HTHEKKLVLERSKTKSKSPESRDRSNTSNTS 102


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 374  TGFTLLCLDKVHPFMFKNSVKSTLFLLQHDQP 279
            TG + L   +    +FK+S  +T  +LQH  P
Sbjct: 1239 TGVSTLRGQERQRSLFKDSSPATALMLQHAPP 1270


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 439 PVAGPQLQRPPFETPLVLLETH 504
           P   PQ   PP E PLV ++ H
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPH 502


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
          protein.
          Length = 69

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -1

Query: 37 KCVSCMYVCSNK 2
          KC  C Y C NK
Sbjct: 18 KCEKCSYSCVNK 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,750
Number of Sequences: 438
Number of extensions: 4762
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)