Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20752
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51700.1 68418.m06411 RAR1 disease resistance protein (RAR1) ...    56   2e-08
At4g19580.1 68417.m02878 DNAJ heat shock N-terminal domain-conta...    31   0.99 
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam...    28   5.3  
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    28   5.3  
At3g26810.1 68416.m03354 transport inhibitor response protein, p...    28   7.0  
At5g61040.1 68418.m07660 expressed protein                             27   9.2  

>At5g51700.1 68418.m06411 RAR1 disease resistance protein (RAR1)
           Contains a 3 nt micro-exon at exon 2.
          Length = 204

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 22/40 (55%), Positives = 26/40 (65%)
 Frame = +1

Query: 256 PVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKHSNVKPV 375
           P FHD  K WSCC ++S DF+ FL I GC   KH+  KPV
Sbjct: 16  PFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPV 55



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 591 CKNGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCC 707
           CKN GC   F+    +E+ C++HPG  +FH+ L+ W CC
Sbjct: 137 CKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCC 175



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 259 VFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKHSN 363
           VFHD  +GW CC+    +F EF+ I  CT   HS+
Sbjct: 164 VFHDRLRGWKCCDVHVKEFDEFMEIPPCTKGWHSS 198



 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +2

Query: 179 CYNRGCGQAFDPNDNEKDECRHHPG 253
           C N+GCGQ F   DN +  C HHPG
Sbjct: 137 CKNKGCGQTFKERDNHETACSHHPG 161



 Score = 30.7 bits (66), Expect = 0.99
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 669 PIFHEGLKFWSCC 707
           P FH+G+K WSCC
Sbjct: 16  PFFHDGMKEWSCC 28


>At4g19580.1 68417.m02878 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI4
           DnaJ homolog subfamily B member 12 {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 301

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 507 SESLKQSQPNTEQKTPVSEDGNVAIGTSCKNGGCNT 614
           SES  +   + +QK P  ++ ++   T CKN  CNT
Sbjct: 189 SESDPEPDSSWKQKKPRKQEEDITFWTVCKNNKCNT 224


>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 794

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 611 VTTTIFTTCSNSYISIFRDWSFL 543
           VTT+   T  N+Y  IFRDW  +
Sbjct: 669 VTTSSIATLFNTYWDIFRDWGLM 691


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
           KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 522 QSQPNTEQKTPVSEDGNVAIGTSCKNG 602
           +S+PN+ Q TP      V++G  C  G
Sbjct: 97  RSEPNSAQSTPTRNGARVSLGGGCATG 123


>At3g26810.1 68416.m03354 transport inhibitor response protein,
           putative E3 ubiquitin ligase SCF complex F-box subunit;
           similar to transport inhibitor response 1 GI:2352492
           from [Arabidopsis thaliana]
          Length = 575

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 549 TPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIF 677
           T V+E+G VAI   C        F    TN +L T    CP F
Sbjct: 352 TAVTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNF 394


>At5g61040.1 68418.m07660 expressed protein
          Length = 590

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 152 MPEDKHLVQCYNRGCGQAFDPNDNEKDECRHHPGLQYSTMLTRAG 286
           + EDK  + C   G   + +   NEK + R H GL  +TML + G
Sbjct: 199 LSEDKATLSCGVPGVESSIERVGNEKSKSRKH-GLGDATMLLQIG 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,575
Number of Sequences: 28952
Number of extensions: 341421
Number of successful extensions: 819
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)