Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20749
         (320 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7XEH4 Cluster: Expressed protein; n=5; Oryza sativa|Re...    36   0.17 
UniRef50_Q7RST7 Cluster: Streptococcus pyogenes AMV258; n=5; Pla...    31   6.5  
UniRef50_A5CVL3 Cluster: O-succinylhomoserine sulfhydrylase; n=3...    30   8.6  

>UniRef50_Q7XEH4 Cluster: Expressed protein; n=5; Oryza sativa|Rep:
            Expressed protein - Oryza sativa subsp. japonica (Rice)
          Length = 2033

 Score = 35.9 bits (79), Expect = 0.17
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 152  NHINVSVDTEKLQNCVCNRKINYLSFIKPCQKF-YTNNIVIRIISKIEDSLHY 307
            NH++ S++   L+NC+ + K   +     CQKF   N+    +IS+++D   Y
Sbjct: 1130 NHMSASINVVILENCLADLKDKNVDLFNECQKFAEANHAAEMLISQMKDEARY 1182


>UniRef50_Q7RST7 Cluster: Streptococcus pyogenes AMV258; n=5;
           Plasmodium (Vinckeia)|Rep: Streptococcus pyogenes AMV258
           - Plasmodium yoelii yoelii
          Length = 683

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 137 QKKL*NH-INVSVDTEKLQNCVCNRKINYLSFIK 235
           ++K+ NH I  S DTEK Q+C+ N KINY + IK
Sbjct: 588 KEKIQNHDIIPSDDTEK-QSCLSNNKINYNNSIK 620


>UniRef50_A5CVL3 Cluster: O-succinylhomoserine sulfhydrylase; n=3;
           Bacteria|Rep: O-succinylhomoserine sulfhydrylase -
           Vesicomyosocius okutanii subsp. Calyptogena okutanii
           (strain HA)
          Length = 388

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -2

Query: 280 NNPNDNVVGIEFLTRLNKRKVIYLSVTNTIL 188
           +NP   VV I  L+R++K   I L+V NTIL
Sbjct: 155 SNPLGEVVNINALSRISKANSILLAVDNTIL 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 254,677,425
Number of Sequences: 1657284
Number of extensions: 4109693
Number of successful extensions: 7388
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7388
length of database: 575,637,011
effective HSP length: 83
effective length of database: 438,082,439
effective search space used: 10075896097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)