Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20749
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    26   1.2  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   1.6  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   2.1  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    24   6.6  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   6.6  

>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 168 VLTLRNYKIVFVTER*ITFRLLSLVKNSIPTT 263
           VLTL+ ++     E   +FRL  L++NSI  T
Sbjct: 189 VLTLKAHRYALWAENTCSFRLAELLRNSIGDT 220


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +2

Query: 131 FSQKKL*NHINVSVDTEKLQNCVCNRKINYLSFIKPCQKFYTN 259
           F +K   +   V V  E+L++ +   K +Y SF++  QK+ ++
Sbjct: 444 FGKKTGIDDSEVGVSIEELKDKILKEKPDYKSFVEEAQKYVSD 486


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 1   IYPIC*IGFDFANSQNTYKY 60
           IY +C +   F NS+N +KY
Sbjct: 73  IYAVCLMNIFFRNSENCFKY 92


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -2

Query: 277 NPNDNVVGI---EFLTRLNKRKVIYLSVTNTIL 188
           N +D++ G     F   L K+  +YLS  NTIL
Sbjct: 194 NTDDSIRGFAHSSFQMALQKKMPLYLSTKNTIL 226


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 242  QKFYTNNIVIRIISKIEDSLHYG 310
            ++F +  +V RII++   SL+YG
Sbjct: 1809 ERFLSGELVTRIINEFGRSLYYG 1831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,439
Number of Sequences: 5004
Number of extensions: 19658
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)