Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20749
         (320 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            22   6.5  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            22   6.5  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    21   8.6  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 227  TKGNLSFGYKHNFV 186
            T  ++ F Y+HNF+
Sbjct: 1700 TNSSILFSYRHNFI 1713


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 227  TKGNLSFGYKHNFV 186
            T  ++ F Y+HNF+
Sbjct: 1701 TNSSILFSYRHNFI 1714


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 245  KFYTNNIVIRIISKIEDSL 301
            + YT   +IR I+KI D L
Sbjct: 957  EIYTKRSIIRTIAKIYDPL 975


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,176
Number of Sequences: 2352
Number of extensions: 4363
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 21613350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)