Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20749
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   4.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   6.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   8.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   8.4  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 152 NHINVSVDTEKLQNCV 199
           N  N+S+D + L  C+
Sbjct: 104 NRKNISIDVKMLSECI 119


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 260 NIVIRIISKIED 295
           NI +R ISKI+D
Sbjct: 64  NIFVRSISKIDD 75


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
          protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 78 WHFFLSVLVSILGISKIKT 22
          WHF   V +++    +IKT
Sbjct: 2  WHFLWIVFLALANGEEIKT 20


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 218 NLSFGYKHNFVVSQCQ 171
           N+ F   + FV+ +CQ
Sbjct: 700 NVQFSVLYGFVIIECQ 715


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,822
Number of Sequences: 438
Number of extensions: 1471
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)