Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20749
         (320 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76760.1 68414.m08933 thioredoxin family protein similar to t...    27   2.8  
At1g65900.1 68414.m07478 expressed protein                             26   4.9  
At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY) domain-c...    25   8.6  

>At1g76760.1 68414.m08933 thioredoxin family protein similar to
           thioredoxin CH2, M-type, chloroplast precursor GB:P23400
           SP|P23400 [Chlamydomonas reinhardtii]; contains Pfam
           profile: PF00085 Thioredoxin
          Length = 172

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +2

Query: 164 VSVDTEKLQNCVCNRKINYL-SFI-----KPCQKFYTNNIVIRIISKIEDSL 301
           V +DTEK  +     KI  L +FI     +PC +F       ++I +IEDSL
Sbjct: 117 VKIDTEKYPSIANKYKIEALPTFILFKDGEPCDRFEGALTAKQLIQRIEDSL 168


>At1g65900.1 68414.m07478 expressed protein
          Length = 408

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 4/26 (15%)
 Frame = +2

Query: 254 TNNIVIRIISKIEDS----LHYGRSF 319
           +NN+ + IISK+ED+    ++YG++F
Sbjct: 29  SNNVKVGIISKVEDATNFHIYYGQTF 54


>At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY)
           domain-containing protein similar to RanBPM [Homo
           sapiens] GI:15080674; contains Pfam profile PF00622:
           SPRY domain
          Length = 465

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 173 DTEKLQNCVCNRKINYLSFIKPCQKFYTNNIVIRIISKIEDSLHYGR 313
           + +KL   +     + + F+  CQKF      I ++ K+E+ ++YGR
Sbjct: 317 ELQKLYPQIVQDDKSVVCFLLHCQKF------IELVGKLEEGVNYGR 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,566,197
Number of Sequences: 28952
Number of extensions: 87862
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 350523880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)