Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20748
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    31   0.14 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   3.9  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.1  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    26   5.1  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   9.0  

>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 532 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMM 645
           S   DYHL++ L      E YK QR   GK   LK+++
Sbjct: 31  SHLTDYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 528 REQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 695
           R  +Q + PG L     P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 516 RTGMQPMMPG-LQQPMAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQ 571



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 579 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 695
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 637 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 676



 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 579 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 695
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 703 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMAPQ 742



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 579 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 695
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 560 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 599



 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +3

Query: 579 PRRTVQGPARPRRQGLDPQEDD-GQARRPRRVHLRQETPR 695
           P+RT   P  P+R G+ PQ     Q   P+R  ++   P+
Sbjct: 609 PQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQ 648


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +2

Query: 302 GFANYSSMLRLKNASTRSKLIDYLLMRGKLTGSVTDLITYRAPANTSWE---SGASALEH 472
           GF++  S L L+N+ +    I+Y+L +    G   +   Y A +++S +   S   AL +
Sbjct: 195 GFSDDQSRLALENSGSLEDAIEYILEKDNAKGQYREGEAYEAFSDSSAKTQFSDFQALSN 254

Query: 473 ALK 481
            LK
Sbjct: 255 QLK 257


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 514 VIKTCESSFNDYHLVDYLSGEFLDEQYKGQRD-LAGKASTLKKMMDK 651
           V++ CE  F  +    YL      E  KG+ D L  + + LK+ +DK
Sbjct: 187 VLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENTALKEKIDK 233


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 466 RARPQAGE*RHQQHREVIKTCESSFNDYHLVD 561
           R R +  +  H +H E+I +  +SF+D  LVD
Sbjct: 664 RIRQEPPKMSHLKHLELISSAANSFSDSDLVD 695


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 134 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 27
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,505
Number of Sequences: 5004
Number of extensions: 49387
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)