Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20748
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 33 0.25
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 33 0.25
01_03_0046 - 11937619-11938260 30 2.3
12_01_0383 - 3006974-3007200,3007808-3007985,3008398-3008478,300... 29 4.1
09_06_0137 - 21080263-21081894 29 5.4
02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011... 29 5.4
01_06_1162 + 35010414-35011106 29 5.4
08_02_1139 - 24638824-24639325,24639528-24639713,24639801-246405... 28 7.1
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393 28 9.4
08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212... 28 9.4
07_03_1026 - 23369298-23370326 28 9.4
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 28 9.4
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 28 9.4
03_02_1030 - 13536511-13537929 28 9.4
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 532 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKLL 693
S ND L D++ EFL+EQ + + ++ + L+++ H G + FD+KLL
Sbjct: 201 SRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 251
Score = 28.3 bits (60), Expect = 7.1
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = +2
Query: 269 AYFSIDTVNRPGFANYSSMLRLKNASTRSKLIDYLLMRG---KLTGSVTDLITYRAPANT 439
AYF D V GFA + + KL+ Y MRG +L VT L + P
Sbjct: 114 AYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLTEFDHPEK- 172
Query: 440 SWESGASALEHALKLESDVTNSI 508
A+E AL LE V +
Sbjct: 173 --GDALYAMELALALEKLVNEKL 193
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +1
Query: 532 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKLL 693
S ND L D++ EFL+EQ + + ++ + L+++ H G + FD+KLL
Sbjct: 227 SRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH---GVWHFDQKLL 277
>01_03_0046 - 11937619-11938260
Length = 213
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 465 SSTPSSWRVTSPTASGGHQDLREQLQRLPPGRLLVRGIPRRTVQGPARP 611
S T S + VT GG D ++ G + +R +P T GPA P
Sbjct: 99 SGTCSDFHVTCGAGGGGATDSSGEMWASDVGEVRMRDVPMATEFGPAAP 147
>12_01_0383 -
3006974-3007200,3007808-3007985,3008398-3008478,
3008583-3008822
Length = 241
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 462 PSSTPSSWRVTSPTASGGHQDLREQLQRLPP 554
P S+P+ W+V + +GG D R +L PP
Sbjct: 99 PYSSPAQWQVAAGLVNGGAVDHRRRLGSPPP 129
>09_06_0137 - 21080263-21081894
Length = 543
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +2
Query: 281 IDTVNRPGFANYSSMLRLKNASTRSKLIDYLLMRGKLTGSVTDLITYRAPANTSWESGAS 460
ID+ P A +++++R + RS+ + + + + G D+ITY T G S
Sbjct: 311 IDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQS 370
Query: 461 ALEHALKL 484
L+ A+K+
Sbjct: 371 NLDAAMKM 378
>02_05_0448 -
29100674-29100716,29100821-29100902,29101010-29101130,
29101481-29101546,29101628-29101735,29102083-29102148,
29102605-29102633,29102773-29102902
Length = 214
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -1
Query: 182 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDIQKN 33
P+I G+ D + C D KE PH RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177
>01_06_1162 + 35010414-35011106
Length = 230
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
Frame = +3
Query: 486 RVTSPTASGGHQDLREQLQRLPPGRLLVRG------IPRRTVQGPARPRRQGLDPQEDDG 647
R S S H R + PP R++V+G +P TV R+QG QE++
Sbjct: 84 RRDSQVTSIAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPATVSSLQHQRQQGKQCQENNS 143
Query: 648 QARRPRRVHLRQETPR 695
+ R L ++ PR
Sbjct: 144 SLQLQRGGTLLRQHPR 159
>08_02_1139 -
24638824-24639325,24639528-24639713,24639801-24640543,
24640709-24640870,24641141-24641500
Length = 650
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 275 FSIDTVNRPGFANYSSMLRLKNASTRSK-LIDYLLMRGKLTGSVTDLITYRAPANTSWES 451
FS++ N+P + L L+++ST +K +++ K + S+ D + +PAN E+
Sbjct: 176 FSVNHQNQPSVTDNHQELSLQSSSTAAKDFTSATIVKPKTSDSMLDNDDHPSPANDQEEN 235
Query: 452 GASALE 469
+ E
Sbjct: 236 ATNKNE 241
>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
Length = 278
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 549 PPGRLLVRGIPRRTVQGPARPRRQG-LDPQEDDGQARRPRRVHL 677
PPG VR P++ Q P PRR+ P R P R HL
Sbjct: 118 PPGFAGVRQPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHL 161
>08_02_1427 -
27020819-27020918,27021017-27021081,27021160-27021246,
27021398-27021466,27022168-27022219,27022443-27022525,
27022677-27022753,27022880-27023074,27023204-27023261,
27023862-27023956,27024605-27024758
Length = 344
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 257 LAMGAYFSIDTVNRPGFANYSSMLRLKNASTRSKLIDYLLMRGKLTGSVTDLITYRAPAN 436
LA+G + S+ + GF++ R NA T L++Y+L+ + G + LI R P
Sbjct: 28 LALGQFVSL-LITSTGFSSSELARRGINAPTSQSLLNYILL-SLIYGGI--LIYRRQPLT 83
Query: 437 TSW 445
W
Sbjct: 84 IKW 86
>07_03_1026 - 23369298-23370326
Length = 342
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 459 QPSSTPSSWRVTSPTASGGHQDLREQLQRLPP 554
QPS TPS P S LRE ++R P
Sbjct: 272 QPSPTPSPAPAARPDPSAAENSLREAIERARP 303
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 523 TCESSFNDYHLVDYLSGEFLDEQY-KGQRDLAGKASTL-KKMMDKHAALGEFI 675
TC+SSFND + + ++G E + K Q DL + + KK D+ + EF+
Sbjct: 401 TCDSSFNDKPIRETVAGPLGKELFEKEQEDLLSDLNDIPKKACDRR--INEFV 451
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 27.9 bits (59), Expect = 9.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 523 TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 639
T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 160 TVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>03_02_1030 - 13536511-13537929
Length = 472
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 232 RKWPRQSRLSHGGLLLDRYGEPPRLREL 315
+++PR + G LLL R EPP L EL
Sbjct: 50 KRYPRNAARVKGMLLLARLAEPPGLSEL 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,907,045
Number of Sequences: 37544
Number of extensions: 403852
Number of successful extensions: 1357
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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