Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20748
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 30   1.8  
SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)                   30   2.3  
SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_18389| Best HMM Match : Ferritin (HMM E-Value=2.8e-26)              29   5.4  
SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)                   28   7.2  
SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                28   9.5  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_17318| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_27133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 36/132 (27%), Positives = 60/132 (45%)
 Frame = +1

Query: 298 PRLRELFFDAATEEREHAIQAH*LPAHEGQADRLRNRPHHVQGPRQHVVGERRISPRARP 477
           P   + F +A+ EEREHA +        G    L++    ++ P +   G  +   +A  
Sbjct: 179 PGFHKYFMEASHEEREHAEKLAKFQLQRGGRIVLQD----IKRPERDDWGCGQDVIQAAL 234

Query: 478 QAGE*RHQQHREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHA 657
              +  +Q   ++ K  E    D  + D+L   +L EQ +  ++LAG  + LK++     
Sbjct: 235 DLEKHVNQALHDLHKVAEKH-GDSQMQDWLESHYLTEQVEAIKELAGHMTNLKRV---GP 290

Query: 658 ALGEFIFDKKLL 693
            LGEF FDK  L
Sbjct: 291 GLGEFQFDKHTL 302


>SB_21296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 34/133 (25%), Positives = 60/133 (45%)
 Frame = +1

Query: 298 PRLRELFFDAATEEREHAIQAH*LPAHEGQADRLRNRPHHVQGPRQHVVGERRISPRARP 477
           P   + F  A+ EEREHA +        G    L++    ++ P +   G    S +   
Sbjct: 232 PGFHKYFLKASHEEREHAEKLMKFQNERGGRIVLQD----IKKPEKDEWGCGMDSIQVAL 287

Query: 478 QAGE*RHQQHREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHA 657
              +  +Q   ++ K  E    D  + D++ G FL EQ +  ++LAG  + LK++     
Sbjct: 288 DLEKHVNQALLDLHKIAEKH-GDAQMTDFIEGNFLTEQVEAIKELAGHLTNLKRV---GP 343

Query: 658 ALGEFIFDKKLLG 696
            LGE+ +D + +G
Sbjct: 344 GLGEYQYDHETIG 356



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 20/51 (39%), Positives = 28/51 (54%)
 Frame = +1

Query: 544 DYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKLLG 696
           D  + D+L   FL EQ    + LA   STL+++      LGE+ FDK+ LG
Sbjct: 89  DPQVQDFLESNFLGEQVDSIKTLANYVSTLQRL---GGGLGEYQFDKETLG 136



 Score = 32.3 bits (70), Expect = 0.44
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +2

Query: 269 AYFSIDTVNRPGFANYSSMLRLKNASTRSKLIDYLLMRGKLTGSVTDLITYRAPANTSWE 448
           A+F  D ++ PGFA +      +  +     +++L  RG   G V  L     P    W 
Sbjct: 2   AHFGRDDIHLPGFAAFFKKAAEEEYTHAHMFMEFLNKRG---GRV-KLHHIMKPCRDHWG 57

Query: 449 SGASALEHALKLESDVTNSI 508
           +G  A+  AL LE ++ +++
Sbjct: 58  NGLMAMRDALYLEKEINHAL 77


>SB_27134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 36/132 (27%), Positives = 60/132 (45%)
 Frame = +1

Query: 298 PRLRELFFDAATEEREHAIQAH*LPAHEGQADRLRNRPHHVQGPRQHVVGERRISPRARP 477
           P   + F  A+ EEREHA +        G    L++    ++ P +   G  + + +A  
Sbjct: 164 PGFHKYFMKASHEEREHAEKLAKFQLQRGGRIVLQD----IKRPERDDWGCGQDAIQAAL 219

Query: 478 QAGE*RHQQHREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHA 657
              +  +Q   ++ K  E    D  + D+L   +L EQ +  ++LAG  + LK++     
Sbjct: 220 DLEKHVNQALLDLHKVAEKH-GDSQMQDWLESHYLTEQVEAIKELAGHLTNLKRV---GP 275

Query: 658 ALGEFIFDKKLL 693
            LGEF FDK  L
Sbjct: 276 GLGEFQFDKLTL 287


>SB_45707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 603 ARPRRQGLDPQEDDGQARRPRRVHLR 680
           ARPR+    PQ+ D QA RPR+  L+
Sbjct: 40  ARPRQASRKPQDQDKQAARPRQASLK 65


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = +2

Query: 161 RHHQG*VAHHGADLLQHDEETDPGGSG 241
           RHHQ   AHHG   L+HD E D  GSG
Sbjct: 811 RHHQH-GAHHG---LKHDTENDASGSG 833


>SB_26677| Best HMM Match : AT_hook (HMM E-Value=3.1)
          Length = 355

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 615 RQGLDPQEDDGQARRPRRVHLRQETPR 695
           R+   PQ+ D QA RPR+   RQ  PR
Sbjct: 41  RKTSKPQDQDKQAARPRQARTRQARPR 67


>SB_30241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
 Frame = +3

Query: 459 QPSSTPSSWRVTSPTASGGHQDLREQLQRLPPGRLLVRGIPRRT---------VQGPARP 611
           +P   P+S       A   HQ+ R + +R PP     RG PR++          QG    
Sbjct: 55  RPRPRPNSEGKEGEEADHEHQEERPRGRRPPPWWRRRRGPPRKSDSAEHSGADSQGEGN- 113

Query: 612 RRQGLDPQEDDGQARRPRRVHLRQ-ETPRIE 701
           +++G   +E + + RRPRR   R+   PR E
Sbjct: 114 KQEGSAEEEREQRPRRPRRPRFRKSRQPRSE 144


>SB_18389| Best HMM Match : Ferritin (HMM E-Value=2.8e-26)
          Length = 175

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/60 (30%), Positives = 35/60 (58%)
 Frame = +1

Query: 511 EVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKKL 690
           +VI  C    NDY   +++   ++ EQ + +R+ A +A  L  ++D+ +A G+F  DK++
Sbjct: 112 KVIAKCRQE-NDYATEEFMMW-YVKEQREEERN-ARRALELFDLIDEDSATGKFQLDKEI 168


>SB_39157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
 Frame = +1

Query: 508 REVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTL--KKMMDKHAALGEFIFD 681
           R V  T E  ++D H  DY S       YKG + L  K       K       L EF FD
Sbjct: 7   RVVSDTVELLWSDGHATDYKSSWLAQHAYKGNKKLRVKEELFLWDKERINSTTLPEFSFD 66


>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
          Length = 816

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 486 RVTSPTASGGHQDLREQLQRLPPGRLLVRGIPRRTVQGPARPRRQGLDP 632
           R++ P  S   + L    Q  P G+ LV G PR++ Q     RR  LDP
Sbjct: 395 RISQPRVSPQSRPLASGQQVSPEGQQLVSGRPRQSRQ-ERNGRRLSLDP 442


>SB_47835| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = +1

Query: 349 AIQAH*LPAH-EGQADRLRNRPHHVQGPRQHV 441
           A   H  P H +   D L N+P HV   R HV
Sbjct: 14  ACHVHNKPDHVQNNPDHLNNKPDHVHNKRDHV 45


>SB_36849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 209 VVASLLHGEPLIPDGDGADVTLCSCGRS*GSNESEDSKENSPH 81
           V+A LL G+P+ P   G D  L    +  G+   E  KE +PH
Sbjct: 252 VLAELLLGQPIFPGDSGVD-QLVEIIKVLGTPTREQIKEMNPH 293


>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 630 PQEDDGQARRPRRVHLRQETPRIE 701
           PQ+ D QA RPR+  L+ +T +++
Sbjct: 701 PQDQDKQAARPRQASLKTKTSKLQ 724


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 391  QLAPHEQVVNELGSRARVLQSQHRRIVREAGAVHRIDREVSPHG*VWIDAATS 233
            Q+  HE  + +L ++   L+++   + REAG  HR + E+  +    +DAA S
Sbjct: 1884 QVEGHEGRIRDLKTKLATLENKEAVLTREAGKYHRENVELERN----LDAANS 1932


>SB_17318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 413 ITYRAPANTSWESGASALEHALKLESD 493
           +TY    + +W SG   L H++K++ D
Sbjct: 164 VTYHCLNSAAWSSGKGDLNHSIKIKGD 190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,734,364
Number of Sequences: 59808
Number of extensions: 424842
Number of successful extensions: 1309
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1299
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)